I've run into this problem on previous versions as well and usually just get 
around it by creating a lib->classes symbolic link or just by creating a 
common/lib/ directory.  

-----Original Message-----
From: West, Graeme [mailto:[email protected]] 
Sent: Monday, August 23, 2010 8:11 AM
To: fedora-commons-users
Subject: [fcrepo-user] 3.4 install error: MySQL connector copy (Debian 6, 
Tomcat 6)

Hello all,
First off, congrats to all those who contributed to the 3.4 release. It looks 
really nice so far.

I say 'looks' because although it runs perfectly with the included Tomcat, I'm 
having trouble getting it running with an existing Tomcat 6 installation on 
Debian 6. I may be overlooking something silly, but I thought I'd post anyway.

The problem is that seemingly no matter what I specify in the 'MySQL JDBC 
driver' part of the installer, whether it's 'included' or a custom value, it 
tries and fails to write the file into the Tomcat classes directory. Some 
examples are below.

I think it seems to be happening because Fedora expects that Tomcat stores 
these class files in:
> <tomcat_home>/common/lib/

whereas Debian's version (as far as I know) stores these in:
> <tomcat_home>/common/classes/


I wonder whether there's a way to change the default location that the Fedora 
installer tries to copy the included or specified JAR file to, so that it won't 
fail?

Examples:

Using 'included':
> Preparing FEDORA_HOME...
>       Configuring fedora.fcfg
>       Installing beSecurity
> Will not overwrite existing /var/lib/tomcat6/conf/server.xml.
> Wrote example server.xml to:
>       /usr/local/fedora/install/server.xml
> WARNING: A keystore file already exists at: /var/lib/tomcat6/conf/keystore.
> WARNING: The existing keystore will not be overwritten.
> WARNING: The installer-provided keystore will not be installed, it will be 
> copied to:
>       /usr/local/fedora/install/keystore
> ERROR: Installation failed: 
> /var/lib/tomcat6/common/lib/mysql-connector-java-5.1.6.jar (No such file or 
> directory)
> Caused by:
> java.io.FileNotFoundException: 
> /var/lib/tomcat6/common/lib/mysql-connector-java-5.1.6.jar (No such file or 
> directory)
>       at java.io.FileOutputStream.open(Native Method)
>       at java.io.FileOutputStream.<init>(FileOutputStream.java:209)
>       at java.io.FileOutputStream.<init>(FileOutputStream.java:160)
>       at 
> org.fcrepo.utilities.install.Installer.installJDBCDriver(Installer.java:197)
>       at 
> org.fcrepo.utilities.install.container.ExistingTomcat50.install(ExistingTomcat50.java:22)
>       at org.fcrepo.utilities.install.Installer.install(Installer.java:65)
>       at org.fcrepo.utilities.install.Installer.main(Installer.java:258)
>       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>       at 
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
>       at 
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>       at java.lang.reflect.Method.invoke(Method.java:616)
>       at com.simontuffs.onejar.Boot.run(Boot.java:306)
>       at com.simontuffs.onejar.Boot.main(Boot.java:159)



Using '/var/lib/tomcat6/common/lib/mysql-connector-java-5.1.13-bin.jar' as the 
value, which I manually downloaded and installed into Tomcat:

> Preparing FEDORA_HOME...
>       Configuring fedora.fcfg
>       Installing beSecurity
> Will not overwrite existing /var/lib/tomcat6/conf/server.xml.
> Wrote example server.xml to:
>       /usr/local/fedora/install/server.xml
> WARNING: A keystore file already exists at: /var/lib/tomcat6/conf/keystore.
> WARNING: The existing keystore will not be overwritten.
> WARNING: The installer-provided keystore will not be installed, it will be 
> copied to:
>       /usr/local/fedora/install/keystore
> ERROR: Installation failed: Copy to 
> /var/lib/tomcat6/common/lib/mysql-connector-java-5.1.13-bin.jar failed.

Using '/usr/share/java/mysql-connector-java.jar' as the value (this is a 
symlink to /var/lib/tomcat6/common/lib/mysql-connector-java-5.1.10.jar, and 
using the real location has the same result ). This is the version which ships 
with Debian.

> Preparing FEDORA_HOME...
>       Configuring fedora.fcfg
>       Installing beSecurity
> Will not overwrite existing /var/lib/tomcat6/conf/server.xml.
> Wrote example server.xml to:
>       /usr/local/fedora/install/server.xml
> WARNING: A keystore file already exists at: /var/lib/tomcat6/conf/keystore.
> WARNING: The existing keystore will not be overwritten.
> WARNING: The installer-provided keystore will not be installed, it will be 
> copied to:
>       /usr/local/fedora/install/keystore
> ERROR: Installation failed: Copy to 
> /var/lib/tomcat6/common/lib/mysql-connector-java.jar failed.
> r...@riga:/home/swadmin# java -jar fcrepo-installer-3.4.jar



I'm using Tomcat 6.0.28-1 (Debian), MySQL 5.1.49-1 (Debian), libmysql-java 
5.1.10+dfsg-2 and the Sun Java 6 JDK, all on a 64-bit Debian 6 VM.

Many thanks in advance.

Graeme West


Digital Repository Developer
Information Services
Glasgow Caledonian University
[email protected]




Glasgow Caledonian University is a registered Scottish charity, number SC021474

Winner: Times Higher Education's Widening Participation Initiative of the Year 
2009 and Herald Society's Education Initiative of the Year 2009
http://www.gcu.ac.uk/newsevents/news/bycategory/theuniversity/1/name,6219,en.html

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