that really helped.. thanks a lot.. now while make install there is a error in using libumfpack.a
-------------------------------------------------- [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/GeometryToCGALConverter.cpp.o [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/CSGPrimitives2D.cpp.o Linking CXX shared library libdolfin.so */usr/bin/ld: /home1/03023/rajeswar/lib/libumfpack.a(umf_dl_local_search.o): relocation R_X86_64_32 against `.rodata.str1.4' can not be used when making a shared object; recompile with -fPIC/home1/03023/rajeswar/lib/libumfpack.a: could not read symbols: Bad valuecollect2: ld returned 1 exit statusmake[2]: *** [dolfin/libdolfin.so.1.4.0] Error 1make[1]: *** [dolfin/CMakeFiles/dolfin.dir/all] Error 2make: *** [all] Error 2* -------------------------------------------------- is it missing something.. *with regards..* *M. Sai Rajeswar* *M-tech Computer Technology* *IIT Delhi----------------------------------Cogito Ergo Sum---------* On Tue, Jul 1, 2014 at 7:23 PM, Johannes Ring <[email protected]> wrote: > Is the library libirc.so (or libirc.a) in > /opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64? If not, you > should locate the library and modify the -L path in LDFLAGS. > > Johannes > > > On Tue, Jul 1, 2014 at 3:44 PM, Sai Rajeshwar <[email protected]> wrote: > >> ok i tried the exporting as you mentioned.. then ran cmake.. >> >> --------------------------------------------------- >> >> login3$ cmake -DCMAKE_INSTALL_PREFIX=/home1/03023/rajeswar/ >> -DCMAKE_PREFIX_PATH=/home/03023/rajeswar -DDOLFIN_ENABLE_SCOTCH=OFF >> -DDOLFIN_ENABLE_UMFPACK=ON >> 0-DGMP_LIBRARIES:FILEPATH=/home1/03023/rajeswar/lib/libgmp.so >> .. >> >> >> >> -- The C compiler identification is GNU 4.4.7 >> -- The CXX compiler identification is GNU 4.4.7 >> -- Check for working C compiler: /usr/bin/gcc >> -- Check for working C compiler: /usr/bin/gcc -- broken >> CMake Error at >> /opt/apps/cmake/2.8.9/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake:52 >> (MESSAGE): >> The C compiler "/usr/bin/gcc" is not able to compile a simple test >> program. >> >> It fails with the following output: >> >> Change Dir: /home1/03023 >> /rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp >> >> >> >> Run Build Command:/usr/bin/gmake "cmTryCompileExec665115447/fast" >> >> /usr/bin/gmake -f CMakeFiles/cmTryCompileExec665115447.dir/build.make >> CMakeFiles/cmTryCompileExec665115447.dir/build >> >> gmake[1]: Entering directory >> `/home1/03023/rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp' >> >> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_progress_report >> /home1/03023 >> /rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp/CMakeFiles >> 1 >> >> Building C object >> CMakeFiles/cmTryCompileExec665115447.dir/testCCompiler.c.o >> >> /usr/bin/gcc -o >> CMakeFiles/cmTryCompileExec665115447.dir/testCCompiler.c.o >> -c >> /home1/03023 >> /rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp/testCCompiler.c >> >> >> Linking C executable cmTryCompileExec665115447 >> >> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_link_script >> CMakeFiles/cmTryCompileExec665115447.dir/link.txt --verbose=1 >> >> /usr/bin/gcc >> -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64 -lirc >> CMakeFiles/cmTryCompileExec665115447.dir/testCCompiler.c.o -o >> cmTryCompileExec665115447 -rdynamic >> >> /usr/bin/ld: cannot find -lirc >> >> >> collect2: ld returned 1 exit status >> >> gmake[1]: *** [cmTryCompileExec665115447] Error 1 >> >> gmake[1]: Leaving directory >> `/home1/03023/rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp' >> >> gmake: *** [cmTryCompileExec665115447/fast] Error 2 >> >> >> >> >> >> CMake will not be able to correctly generate this project. >> >> Call Stack (most recent call first): >> CMakeLists.txt:9 (project) >> >> >> -- Configuring incomplete, errors occurr >> >> *with regards..* >> >> *M. Sai Rajeswar* >> *M-tech Computer Technology* >> >> >> *IIT Delhi----------------------------------Cogito Ergo Sum--------- * >> >> >> On Tue, Jul 1, 2014 at 7:05 PM, Johannes Ring <[email protected]> wrote: >> >>> It looks like you are linking to Intel compiled libraries but are >>> missing a library: >>> >>> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_link_script >>> CMakeFiles/cmTryCompileExec1785079256.dir/link.txt --verbose=1 >>> /usr/bin/c++ -std=c++0x -DUMFPACK_TEST_RUNS -fopenmp >>> CMakeFiles/cmTryCompileExec1785079256.dir/src.cxx.o -o >>> cmTryCompileExec1785079256 -rdynamic >>> -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64 >>> /home1/03023/rajeswar/lib/libumfpack.a /home1/03023/rajeswar/lib/libamd.a >>> -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core >>> /home1/03023/rajeswar/lib/libsuitesparseconfig.a >>> /home1/03023/rajeswar/lib/libsuitesparseconfig.a -lgfortran >>> -Wl,-rpath,/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64 >>> /home1/03023/rajeswar/lib/libumfpack.a(umf_di_kernel_init.o): In >>> function `packsp': >>> ../Source/umf_kernel_init.c:(.text+0xf8): undefined reference to >>> `__intel_ssse3_rep_memcpy' >>> ../Source/umf_kernel_init.c:(.text+0x132): undefined reference to >>> `__intel_ssse3_rep_memcpy' >>> ... >>> >>> The symbol __intel_ssse3_rep_memcpy is provided by libirc.so. Try adding >>> it to LDFLAGS: >>> >>> export >>> LDFLAGS="-L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64 >>> -lirc" >>> >>> Then run cmake again. >>> >>> Johannes >>> >>> >>> >>> On Tue, Jul 1, 2014 at 12:12 PM, Sai Rajeshwar <[email protected]> >>> wrote: >>> >>>> i made findpath(UMFPACK REQUIRED) in CMakeLists.txt to get following >>>> log file >>>> CMakeError.log >>>> <https://docs.google.com/file/d/0B02fGs-cS7CedE85Wm1qdXhTU0U/edit?usp=drive_web> >>>> >>>> >>>> with findpath(UMFPACK QUIET) the following is the log file >>>> >>>> >>>> CMakeError2.log >>>> <https://docs.google.com/file/d/0B02fGs-cS7CeUmkxNGpSQTY3MEU/edit?usp=drive_web> >>>> >>>> >>>> thought i will send you both >>>> >>>> *with regards..* >>>> >>>> *M. Sai Rajeswar* >>>> *M-tech Computer Technology* >>>> >>>> >>>> *IIT Delhi----------------------------------Cogito Ergo Sum--------- * >>>> >>>> >>>> On Tue, Jul 1, 2014 at 3:24 PM, Johannes Ring <[email protected]> >>>> wrote: >>>> >>>>> On Tue, Jul 1, 2014 at 11:40 AM, Sai Rajeshwar <[email protected]> >>>>> wrote: >>>>> >>>>>> i installed Suitsparse in /home1/03023/rajeswar/lib and >>>>>> /home1/03023/rajeswar/include >>>>>> as lib and include directories.. the package it self is in /home1/ >>>>>> 03023/rajeswar/Suitsparse from which i built it.. >>>>>> >>>>>> now for dolfin i did the following... >>>>>> ------------------------------------------ >>>>>> cmake -DCMAKE_INSTALL_PREFIX=/home1/03023/rajeswar/ >>>>>> -DCMAKE_PREFIX_PATH=/home/03023/rajeswar -DDOLFIN_ENABLE_SCOTCH=OFF >>>>>> -DGMP_LIBRARIES:FILEPATH=/home1/03023/rajeswar/lib/libgmp.so .. >>>>>> >>>>>> >>>>>> still it gave the same result.. umfpack, cholmod tests failed >>>>>> >>>>> >>>>> Please attach CMakeFiles/CMakeError.log from the DOLFIN build >>>>> directory. >>>>> >>>>> Johannes >>>>> >>>> >>>> >>> >> >
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