Hi,
I'm writing a program calling FEniCS. When my program runs, it comes out
the following massage. Do you know how to deal with it?
Thanks.
Best,
Shihua
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: !
[0]PETSC ERROR: Unable to open Options File petsc_options!
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.4.2, Jul, 02, 2013
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: ./fsi.ex on a linux-gnu-c-opt named civar-Lenovo by
civar Sat Aug 16 19:35:01 2014
[0]PETSC ERROR: Libraries linked from
/build/buildd/petsc-3.4.2.dfsg1/linux-gnu-c-opt/lib
[0]PETSC ERROR: Configure run at Fri Nov 8 13:30:08 2013
[0]PETSC ERROR: Configure options --with-shared-libraries
--with-debugging=0 --useThreads 0 --with-clanguage=C++ --with-c-support
--with-fortran-interfaces=1 --with-mpi-dir=/usr/lib/openmpi
--with-mpi-shared=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack
--with-blacs=1 --with-blacs-include=/usr/include
--with-blacs-lib="[/usr/lib/libblacsCinit-openmpi.so,/usr/lib/libblacs-openmpi.so]"
--with-scalapack=1 --with-scalapack-include=/usr/include
--with-scalapack-lib=/usr/lib/libscalapack-openmpi.so --with-mumps=1
--with-mumps-include=/usr/include
--with-mumps-lib="[/usr/lib/libdmumps.so,/usr/lib/libzmumps.so,/usr/lib/libsmumps.so,/usr/lib/libcmumps.so,/usr/lib/libmumps_common.so,/usr/lib/libpord.so]"
--with-umfpack=1 --with-umfpack-include=/usr/include/suitesparse
--with-umfpack-lib="[/usr/lib/libumfpack.so,/usr/lib/libamd.so]"
--with-cholmod=1 --with-cholmod-include=/usr/include/suitesparse
--with-cholmod-lib=/usr/lib/libcholmod.so --with-spooles=1
--with-spooles-include=/usr/include/spooles
--with-spooles-lib=/usr/lib/libspooles.so --with-hypre=1
--with-hypre-dir=/usr --with-ptscotch=1
--with-ptscotch-include=/usr/include/scotch
--with-ptscotch-lib="[/usr/lib/libptesmumps.so,/usr/lib/libptscotch.so,/usr/lib/libptscotcherr.so]"
--with-fftw=1 --with-fftw-include=/usr/include
--with-fftw-lib="[/usr/lib/x86_64-linux-gnu/libfftw3.so,/usr/lib/x86_64-linux-gnu/libfftw3_mpi.so]"
--with-hdf5=1 --with-hdf5-dir=/usr --CXX_LINKER_FLAGS=-Wl,--no-as-needed
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: PetscOptionsInsertFile() line 458 in
src/sys/objects/options.c
Number of Global Vertices: 1578
Number of Mesh Vertices: 1578
Number of Mesh Elements: 3033
terminate called after throwing an instance of 'std::runtime_error'
what():
***
-------------------------------------------------------------------------
*** DOLFIN encountered an error. If you are not able to resolve this issue
*** using the information listed below, you can ask for help at
***
***
***
*** Remember to include the error message listed below and, if possible,
*** include a *minimal* running example to reproduce the error.
***
***
-------------------------------------------------------------------------
*** Error: Unable to access parameter set.
*** Reason: Parameter set "problem_parameters.Q_F" not defined.
*** Where: This error was encountered inside Parameters.cpp.
*** Process: 0
***
*** DOLFIN version: 1.3.0
*** Git changeset: unknown
***
-------------------------------------------------------------------------
[civar-Lenovo:02664] *** Process received signal ***
[civar-Lenovo:02664] Signal: Aborted (6)
[civar-Lenovo:02664] Signal code: (-6)
[civar-Lenovo:02664] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0)
[0x7f2ddd734cb0]
[civar-Lenovo:02664] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35)
[0x7f2ddb9774f5]
[civar-Lenovo:02664] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b)
[0x7f2ddb97ac5b]
[civar-Lenovo:02664] [ 3]
/usr/lib/x86_64-linux-gnu/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x11d)
[0x7f2ddbfce69d]
[civar-Lenovo:02664] [ 4]
/usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb5846) [0x7f2ddbfcc846]
[civar-Lenovo:02664] [ 5]
/usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb5873) [0x7f2ddbfcc873]
[civar-Lenovo:02664] [ 6]
/usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb596e) [0x7f2ddbfcc96e]
[civar-Lenovo:02664] [ 7]
/usr/lib/libdolfin.so.1.3(_ZNK6dolfin6Logger12dolfin_errorESsSsSs+0x78a)
[0x7f2ddedcc69a]
[civar-Lenovo:02664] [ 8]
/usr/lib/libdolfin.so.1.3(_ZN6dolfin12dolfin_errorESsSsSsz+0x138)
[0x7f2ddedd25d8]
[civar-Lenovo:02664] [ 9]
/usr/lib/libdolfin.so.1.3(_ZN6dolfin10ParametersclESs+0xd3) [0x7f2dde73a293]
[civar-Lenovo:02664] [10]
/usr/lib/libdolfin.so.1.3(_ZN6dolfin10Parameters6updateERKS0_+0x1dd)
[0x7f2dde73a4fd]
[civar-Lenovo:02664] [11]
./fsi.ex(_ZN7FASPFSI11ProblemBase14readParametersESs+0xd2) [0x766672]
[civar-Lenovo:02664] [12]
./fsi.ex(_ZN7FASPFSI11ProblemBaseC2ERN6dolfin4MeshERNS1_12MeshFunctionImEESs+0xf2)
[0x767202]
[civar-Lenovo:02664] [13]
./fsi.ex(_ZN7FASPFSI10SolverBaseC2ERN6dolfin4MeshERNS1_12MeshFunctionImEESs+0x3c)
[0x56aacc]
[civar-Lenovo:02664] [14]
./fsi.ex(_ZN8fsibenchC2ERN6dolfin4MeshERNS0_12MeshFunctionImEESs+0x2d)
[0x56744d]
[civar-Lenovo:02664] [15] ./fsi.ex(main+0x32d) [0x565b0d]
[civar-Lenovo:02664] [16]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f2ddb96278d]
[civar-Lenovo:02664] [17] ./fsi.ex() [0x566811]
[civar-Lenovo:02664] *** End of error message ***
_______________________________________________
fenics mailing list
[email protected]
http://fenicsproject.org/mailman/listinfo/fenics
