On Sun, Jun 27, 2010 at 1:13 AM, Douglas N Arnold <[email protected]> wrote: > I have Ubuntu 10.04 (lucid). The output you requested is below. > > : gibbs 501; cat /etc/issue > Ubuntu 10.04 LTS \n \l > > : gibbs 502; dpkg -s libdolfin0 > Package: libdolfin0 > Status: install ok installed > Priority: extra > Section: libs > Installed-Size: 3516 > Maintainer: Johannes Ring <[email protected]> > Architecture: amd64 > Source: dolfin > Version: 0.9.7-2~ppa1~lucid1 > Replaces: libdolfin > Provides: libdolfin > Depends: ufc (>= 1.2.0), python-ffc (>= 0.7.0), python-viper (>= 0.4.2), > libamd2.2.0 (>= 1:3.4.0), libarpack2 (>= 2.1+parpack96.dfsg), libblas3gf | > libblas.so.3gf | libatlas3gf-base, libboost-filesystem1.40.0 (>= 1.40.0-1), > libboost-program-options1.40.0 (>= 1.40.0-1), libc6 (>= 2.4), libcamd2.2.0 > (>= 1:3.4.0), libccolamd2.7.1 (>= 1:3.4.0), libcgal4, libcholmod1.7.1 (>= > 1:3.4.0), libcolamd2.7.1 (>= 1:3.4.0), libgcc1 (>= 1:4.1.1), liblapack3gf | > liblapack.so.3gf | libatlas3gf-base, libopenmpi1.3, libparmetis3.1, > libpetsc3.0.0, libslepc3.0.0, libstdc++6 (>= 4.4.0), libumfpack5.4.0 (>= > 1:3.4.0), libx11-6, libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4) > Suggests: dolfin-doc, libdolfin0-dbg, python-pydolfin0 > Conflicts: libdolfin > Description: shared libraries for DOLFIN > DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE > (Problem Solving Environment) for ordinary and partial differential > equations. > . > This package contains the shared libraries. > Homepage: http://www.fenics.org/wiki/DOLFIN > Original-Maintainer: Debian Scientific Computing Team > <[email protected]> > : gibbs 503; dpkg -s python-ufc > Package: python-ufc > Status: install ok installed > Priority: extra > Section: python > Installed-Size: 316 > Maintainer: Johannes Ring <[email protected]> > Architecture: amd64 > Source: ufc > Version: 1.4.0-2~ppa1~karmic1
It seems that UFC hasn't been upgraded yet. Try to run sudo apt-get upgrade and see if that helps. If not, try instead sudo apt-get dist-upgrade Please let me know if this fixes your issue. Johannes > Depends: ufc (= 1.4.0-2~ppa1~karmic1), python (<< 2.7), python (>= 2.6), > python-central (>= 0.6.11), libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 > (>= 4.1.1) > Description: unified code generation interface for form-compilers > UFC (Unified Form-assembly Code) is a unified framework for finite element > assembly. More precisely, it defines a fixed interface for communicating > low > level routines (functions) for evaluating and assembling finite element > variational forms. The UFC interface consists of a single header file ufc.h > that specifies a C++ interface that must be implemented by code that > complies > with the UFC specification. Examples of form compilers that support the UFC > interface are FFC and SyFi. > . > This package contains the Python bindings for UFC. > Homepage: http://www.fenics.org/wiki/UFC > Original-Maintainer: Debian Scientific Computing Team > <[email protected]> > Python-Version: 2.6 > : gibbs 504; python demo.py > Calling FFC just-in-time (JIT) compiler, this may take some time. > Traceback (most recent call last): > File "demo.py", line 24, in <module> > V = FunctionSpace(mesh, "CG", 1) > File "/usr/lib/python2.6/dist-packages/dolfin/function/functionspace.py", > line 226, in __init__ > FunctionSpaceBase.__init__(self, mesh, element) > File "/usr/lib/python2.6/dist-packages/dolfin/function/functionspace.py", > line 44, in __init__ > ufc_element, ufc_dofmap = jit(self._ufl_element) > File "/usr/lib/python2.6/dist-packages/dolfin/compilemodules/jit.py", line > 44, in mpi_jit > return local_jit(*args, **kwargs) > File "/usr/lib/python2.6/dist-packages/dolfin/compilemodules/jit.py", line > 103, in jit > return jit_compile(form, parameters=p, common_cell=common_cell) > File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 56, in jit > return jit_element(object, parameters) > File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 135, in > jit_element > (compiled_form, module, form_data) = jit_form(form, parameters) > File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 107, in > jit_form > cache_dir = cache_dir) > File "/usr/lib/python2.6/dist-packages/ufc_utils/build.py", line 53, in > build_ufc_module > (cpp_path, swig_path) = configure_instant() > File "/usr/lib/python2.6/dist-packages/ufc_utils/build.py", line 96, in > configure_instant > """ % ufc.__swigversion__ > OSError: The python extension module of UFC was not compiled with the > present version of swig. > Install swig version 1.3.36 or recompiled UFC with present swig > > > > > > On 06/26/2010 05:44 PM, Johannes Ring wrote: >> >> Hi Douglas, >> >> Which version of Ubuntu do you have? Could you also give me the output >> of these two commands: >> >> dpkg -s libdolfin0 >> dpkg -s python-ufc >> >> Thanks, >> >> Johannes >> >> On Saturday, June 26, 2010, Douglas N Arnold<[email protected]> wrote: >>> >>> The Ubuntu packages don't seem to work anymore. After a fresh >>> download with "apt-get install fenics" following the instructions at the >>> top of http://www.fenics.org/wiki/Download >>> the packages seem to install OK, but when I try to run, e.g., the poisson >>> demo.py, I get a complaint about a swig version mismatch. >>> >>> python /usr/share/doc/dolfin-doc/demo/pde/poisson/python/demo.py >>> Calling FFC just-in-time (JIT) compiler, this may take some time. >>> Traceback (most recent call last): >>> File "/usr/share/doc/dolfin-doc/demo/pde/poisson/python/demo.py", line >>> 24, in<module> >>> V = FunctionSpace(mesh, "CG", 1) >>> File >>> "/usr/lib/python2.6/dist-packages/dolfin/function/functionspace.py", line >>> 226, in __init__ >>> FunctionSpaceBase.__init__(self, mesh, element) >>> File >>> "/usr/lib/python2.6/dist-packages/dolfin/function/functionspace.py", line >>> 44, in __init__ >>> ufc_element, ufc_dofmap = jit(self._ufl_element) >>> File "/usr/lib/python2.6/dist-packages/dolfin/compilemodules/jit.py", >>> line 44, in mpi_jit >>> return local_jit(*args, **kwargs) >>> File "/usr/lib/python2.6/dist-packages/dolfin/compilemodules/jit.py", >>> line 103, in jit >>> return jit_compile(form, parameters=p, common_cell=common_cell) >>> File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 56, in >>> jit >>> return jit_element(object, parameters) >>> File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 135, >>> in jit_element >>> (compiled_form, module, form_data) = jit_form(form, parameters) >>> File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 107, >>> in jit_form >>> cache_dir = cache_dir) >>> File "/usr/lib/python2.6/dist-packages/ufc_utils/build.py", line 53, in >>> build_ufc_module >>> (cpp_path, swig_path) = configure_instant() >>> File "/usr/lib/python2.6/dist-packages/ufc_utils/build.py", line 96, in >>> configure_instant >>> """ % ufc.__swigversion__ >>> OSError: The python extension module of UFC was not compiled with the >>> present version of swig. >>> Install swig version 1.3.36 or recompiled UFC with present swig >>> >>> _______________________________________________ >>> Mailing list: https://launchpad.net/~fenics >>> Post to : [email protected] >>> Unsubscribe : https://launchpad.net/~fenics >>> More help : https://help.launchpad.net/ListHelp >>> >> > > _______________________________________________ Mailing list: https://launchpad.net/~fenics Post to : [email protected] Unsubscribe : https://launchpad.net/~fenics More help : https://help.launchpad.net/ListHelp
