[Fink-beginners] problems with installing raster3d

[Wataru Kagawa]

I am attempting to update the software, raster3d, to version 2.7a-1 
with fink, but I am getting the following message.

The following package will be installed or updated:
  raster3d
rm -rf raster3d-2.7a-1
mkdir -p /sw/src/raster3d-2.7a-1
/sw/bin/tar -xvzf /sw/src/Raster3D_2.7a.tar.gz
Raster3D_2.7a/
Raster3D_2.7a/Makefile
Raster3D_2.7a/Makefile.template
Raster3D_2.7a/VERSION
Raster3D_2.7a/VERSION.incl
Raster3D_2.7a/avs2ps.c
Raster3D_2.7a/local.c
Raster3D_2.7a/label3d
Raster3D_2.7a/ungz.c
Raster3D_2.7a/balls.f
Raster3D_2.7a/modsubs.f
Raster3D_2.7a/normal3d.f
Raster3D_2.7a/rods.f
Raster3D_2.7a/parse.f
Raster3D_2.7a/quadric.f
Raster3D_2.7a/r3dtops.f
Raster3D_2.7a/doc/
Raster3D_2.7a/doc/README.doc
Raster3D_2.7a/doc/avs2ps.l
Raster3D_2.7a/doc/balls.l
Raster3D_2.7a/doc/R3D_manual.pdf
Raster3D_2.7a/doc/normal3d.l
Raster3D_2.7a/doc/raster3d.l
Raster3D_2.7a/doc/render.l
Raster3D_2.7a/doc/ribbon.l
Raster3D_2.7a/doc/rods.l
Raster3D_2.7a/doc/stereo3d.l
Raster3D_2.7a/doc/rastep.l
Raster3D_2.7a/doc/r3d_objects.l
Raster3D_2.7a/doc/label3d.l
Raster3D_2.7a/doc/r3dtops.l
Raster3D_2.7a/materials/
Raster3D_2.7a/materials/transparent.r3d
Raster3D_2.7a/materials/transparent0.r3d
Raster3D_2.7a/materials/transparent1.r3d
Raster3D_2.7a/materials/red.r3d
Raster3D_2.7a/materials/gold.r3d
Raster3D_2.7a/materials/bronze.r3d
Raster3D_2.7a/materials/2-sided.r3d
Raster3D_2.7a/materials/backface.r3d
Raster3D_2.7a/materials/cpk.colours
Raster3D_2.7a/materials/dna.colours
Raster3D_2.7a/materials/residue.colours
Raster3D_2.7a/materials/shapely.colours
Raster3D_2.7a/materials/mycolors.pdb
Raster3D_2.7a/materials/translucent.r3d
Raster3D_2.7a/materials/fog.r3d
Raster3D_2.7a/materials/orange.r3d
Raster3D_2.7a/materials/yellow.r3d
Raster3D_2.7a/materials/silver.r3d
Raster3D_2.7a/materials/green.r3d
Raster3D_2.7a/materials/blue.r3d
Raster3D_2.7a/materials/cyan.r3d
Raster3D_2.7a/materials/grey.r3d
Raster3D_2.7a/materials/lilac.r3d
Raster3D_2.7a/materials/purple.r3d
Raster3D_2.7a/materials/white.r3d
Raster3D_2.7a/materials/darkgrey.r3d
Raster3D_2.7a/materials/pearl.r3d
Raster3D_2.7a/materials/matte.r3d
Raster3D_2.7a/materials/floor.r3d
Raster3D_2.7a/materials/basement.r3d
Raster3D_2.7a/materials/end_material.r3d
Raster3D_2.7a/materials/black.r3d
Raster3D_2.7a/materials/darkgreen.r3d
Raster3D_2.7a/materials/orchid.r3d
Raster3D_2.7a/materials/darkblue.r3d
Raster3D_2.7a/materials/darkred.r3d
Raster3D_2.7a/materials/lightblue.r3d
Raster3D_2.7a/materials/lightgreen.r3d
Raster3D_2.7a/materials/lightgrey.r3d
Raster3D_2.7a/materials/moccasin.r3d
Raster3D_2.7a/materials/lightorange.r3d
Raster3D_2.7a/materials/lightyellow.r3d
Raster3D_2.7a/materials/pink.r3d
Raster3D_2.7a/materials/brown.r3d
Raster3D_2.7a/materials/backdrop_1.r3d
Raster3D_2.7a/materials/backdrop_2.r3d
Raster3D_2.7a/materials/backdrop_3.r3d
Raster3D_2.7a/materials/forestgreen.r3d
Raster3D_2.7a/materials/translucent_30.r3d
Raster3D_2.7a/materials/translucent_60.r3d
Raster3D_2.7a/materials/translucent_90.r3d
Raster3D_2.7a/rastep.f
Raster3D_2.7a/stereo3d
Raster3D_2.7a/render.f
Raster3D_2.7a/parameters.incl
Raster3D_2.7a/ribbon.f
Raster3D_2.7a/ribbon1.f
Raster3D_2.7a/rings3d.f
Raster3D_2.7a/examples/
Raster3D_2.7a/examples/header2.r3d
Raster3D_2.7a/examples/LT.pdb
Raster3D_2.7a/examples/sugars.pdb
Raster3D_2.7a/examples/plane.r3d
Raster3D_2.7a/examples/header4.r3d
Raster3D_2.7a/examples/example1.r3d
Raster3D_2.7a/examples/example2.script
Raster3D_2.7a/examples/example4.script
Raster3D_2.7a/examples/chaincolours.pdb
Raster3D_2.7a/examples/msms/
Raster3D_2.7a/examples/msms/README
Raster3D_2.7a/examples/msms/msms2r3d.c
Raster3D_2.7a/examples/msms/msms2r3d.pl
Raster3D_2.7a/examples/msms/msms_example.script
Raster3D_2.7a/examples/example2.sgi
Raster3D_2.7a/examples/example3.mol
Raster3D_2.7a/examples/example3.r3d
Raster3D_2.7a/examples/README.examples
Raster3D_2.7a/examples/example3.script
Raster3D_2.7a/examples/example7.r3d
Raster3D_2.7a/examples/sugarcolours.pdb
Raster3D_2.7a/examples/example1.script
Raster3D_2.7a/examples/ex7_tex.r3d
Raster3D_2.7a/examples/header1.r3d
Raster3D_2.7a/examples/clip.r3d
Raster3D_2.7a/examples/ex7_header.r3d
Raster3D_2.7a/examples/example5.script
Raster3D_2.7a/examples/example6.r3d
Raster3D_2.7a/examples/sugarG.pdb
Raster3D_2.7a/examples/transparent.r3d
Raster3D_2.7a/examples/example8.script
Raster3D_2.7a/examples/gal_srf.r3d.gz
Raster3D_2.7a/examples/example9.script
Raster3D_2.7a/examples/header8.r3d
Raster3D_2.7a/examples/ex7_labels.r3d
Raster3D_2.7a/examples/ex7_titles.r3d
Raster3D_2.7a/examples/example6.script
Raster3D_2.7a/examples/example5.r3d
Raster3D_2.7a/examples/ex7_helix.r3d
Raster3D_2.7a/examples/example7.script
Raster3D_2.7a/examples/example7.jpeg
Raster3D_2.7a/examples/ex5_matrix.r3d
Raster3D_2.7a/examples/ex5.jpeg
Raster3D_2.7a/suv.f
Raster3D_2.7a/html/
Raster3D_2.7a/html/stereo3d.html
Raster3D_2.7a/html/rods.html
Raster3D_2.7a/html/rings3d.html
Raster3D_2.7a/html/ribbon.html
Raster3D_2.7a/html/render.html
Raster3D_2.7a/html/rgbmap_black.html
Raster3D_2.7a/html/rgbmap_white.html
Raster3D_2.7a/html/rgbtext.html
Raster3D_2.7a/html/raster3d.html
Raster3D_2.7a/html/rastep.html
Raster3D_2.7a/html/r3dtops.html
Raster3D_2.7a/html/label3d.html
Raster3D_2.7a/html/r3d_animation.html
Raster3D_2.7a/html/r3d_colorpicker.html
Raster3D_2.7a/html/r3d_colors.html
Raster3D_2.7a/html/r3d_examples.html
Raster3D_2.7a/html/r3d_hints.html
Raster3D_2.7a/html/r3d_labels.html
Raster3D_2.7a/html/r3d_transparent.html
Raster3D_2.7a/html/README
Raster3D_2.7a/html/normal3d.html
Raster3D_2.7a/html/pdb_anisou.html
Raster3D_2.7a/html/balls.html
Raster3D_2.7a/html/r3d_example1.jpeg
Raster3D_2.7a/html/r3d_example2.jpeg
Raster3D_2.7a/html/r3d_example5.jpeg
Raster3D_2.7a/html/r3d_example7.jpeg
Raster3D_2.7a/html/r3d_example8.jpeg
Raster3D_2.7a/html/r3d_example9.jpeg
Raster3D_2.7a/html/rgb_black.jpeg
Raster3D_2.7a/html/rgb_white.jpeg
Raster3D_2.7a/html/index_button.gif
Raster3D_2.7a/html/r3d_colorpicker.gif
Raster3D_2.7a/html/r3d_example6.gif
Raster3D_2.7a/html/r3d_icon.gif
Raster3D_2.7a/html/rastep_options.gif
Raster3D_2.7a/html/avs2ps.html
Raster3D_2.7a/html/r3d_stereo7.jpeg
Raster3D_2.7a/html/r3d_docbkg.jpg
Raster3D_2.7a/html/r3d_docstyle.css
Raster3D_2.7a/html/r3d_example6.jpeg
Raster3D_2.7a/html/r3dtops_tex2.gif
Raster3D_2.7a/html/r3dtops_tex1.gif
Raster3D_2.7a/html/r3d_obj15.gif
Raster3D_2.7a/html/r3dtops_tex3.gif
Raster3D_2.7a/html/r3d_obj19.gif
Raster3D_2.7a/html/r3d_filters.html
Raster3D_2.7a/html/r3d_msms.png
Raster3D_2.7a/render_patch.aix
Raster3D_2.7a/Makefile.incl
Raster3D_2.7a/grasp/
Raster3D_2.7a/grasp/README
Raster3D_2.7a/grasp/ungrasp.f
Raster3D_2.7a/molscript/
Raster3D_2.7a/molscript/README
Raster3D_2.7a/molscript/graphics.f
Raster3D_2.7a/molscript/grlind.f
Raster3D_2.7a/molscript/raspln.f
Raster3D_2.7a/worms
Raster3D_2.7a/BUGS
Raster3D_2.7a/CHANGELOG
Raster3D_2.7a/INSTALL
Raster3D_2.7a/README
Raster3D_2.7a/Makefile.package
Raster3D_2.7a/Raster3D.csh
Raster3D_2.7a/Raster3D.sh
Raster3D_2.7a/stereo3d_old
Raster3D_2.7a/label3d_old
Raster3D_2.7a/Makefile.win32
Raster3D_2.7a/raster3d-2.7a.spec
sed 's|@FINKPREFIX@|/sw|g' 
</sw/fink/dists/unstable/main/finkinfo/graphics/raster3d-2.7a-1.patch | 
patch -p1
patching file Makefile.template
patching file label3d
patching file stereo3d
patching file Makefile
make linux; make all
mv render.f render.f.bak
egrep -v '(CARRIAGECONTROL|DISPOSE)' render.f.bak > render.f
mv normal3d.f normal3d.f.bak
egrep -v '(CARRIAGECONTROL|DISPOSE)' normal3d.f.bak > normal3d.f
mv rastep.f rastep.f.bak
egrep -v '(CARRIAGECONTROL|DISPOSE)' rastep.f.bak > rastep.f
Making Raster3D 2.7a for linux
gcc -g -dynamic -I/usr/include -I/sw/include -DGUNZIP -DIMAGEPIPE 
-DTIFF_SUPPORT -DTIFF_INVERT -DJPEG_SUPPORT  -DPNG_SUPPORT -DLINUX 
-DNETWORKBYTEORDER -L/sw/lib -o avs2ps avs2ps.c -lm
g77 -g -O -w -o balls balls.f
g77 -g -O -w  -c -o quadric.o quadric.f
g77 -g -O -w  -c -o suv.o suv.f
g77 -g -O -w ¥
rastep.f quadric.o suv.o -L/sw/lib ¥
-o rastep
g77 -g -O -w  -c -o render.o render.f
gcc -g -dynamic -I/usr/include -I/sw/include -DGUNZIP -DIMAGEPIPE 
-DTIFF_SUPPORT -DTIFF_INVERT -DJPEG_SUPPORT  -DPNG_SUPPORT -DLINUX 
-DNETWORKBYTEORDER -c local.c
g77 -g -O -w  -c -o parse.o parse.f
g77 -g -O -w  -c -o r3dtops.o r3dtops.f
gcc -g -dynamic -DGUNZIP -DLINUX -DNETWORKBYTEORDER -c ungz.c
g77 -g -O -w ¥
render.o local.o quadric.o parse.o r3dtops.o ungz.o ¥
-L/sw/lib -lm  -ltiff -ljpeg  -lpng -lz -L/sw/lib ¥
-o render
/usr/bin/ld: Undefined symbols:
restFP
saveFP
collect2: ld returned 1 exit status
make: *** [render] Error 1
### execution of make failed, exit code 2
Failed: compiling raster3d-2.7a-1 failed

I appreciate any suggestions.


Wataru Kagawa, Ph. D.
Special Postdoctoral Researcher
Protein Structure and Function Research Group
RIKEN (Physical and Chemical Research Institute)

W221, West Research Bldg.
1-7-22 Suehiro-cho, Tsurumi-ku
Yokohama, Japan 230-0045

tel.	045-503-9206
fax.	045-503-9201



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