Greetings,
Are there any gurus lurking who might be able to help with this. It's not a fink program, but some of the fink porters might know the answer.

I'm trying to install meme_3.5.0 on an Apple G5 running OS X 10.4.3. Configure seemed fine, but make choked:
$ sudo make
make  all-recursive
Making all in src
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I./include      -Wall -DUNIX -D__USE_FIXED_PROTOTYPES__  -O3 -c `test -f 'alphtype.c' || echo './'`alphtype.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I./include      -Wall -DUNIX -D__USE_FIXED_PROTOTYPES__  -O3 -c `test -f 'hash_alph.c' || echo './'`hash_alph.c
gcc  -Wall -DUNIX -D__USE_FIXED_PROTOTYPES__  -O3   -o alphtype  alphtype.o hash_alph.o  -lm
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I./include      -Wall -DUNIX -D__USE_FIXED_PROTOTYPES__  -O3 -c `test -f 'getsize.c' || echo './'`getsize.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I./include      -Wall -DUNIX -D__USE_FIXED_PROTOTYPES__  -O3 -c `test -f 'hash.c' || echo './'`hash.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I./include      -Wall -DUNIX -D__USE_FIXED_PROTOTYPES__  -O3 -c `test -f 'read_seq_file.c' || echo './'`read_seq_file.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I./include      -Wall -DUNIX -D__USE_FIXED_PROTOTYPES__  -O3 -c `test -f 'background.c' || echo './'`background.c
gcc  -Wall -DUNIX -D__USE_FIXED_PROTOTYPES__  -O3   -o getsize  getsize.o hash.o hash_alph.o read_seq_file.o background.o -lm -lm
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I./include      -Wall -DUNIX -D__USE_FIXED_PROTOTYPES__  -O3 -c `test -f 'readseq.c' || echo './'`readseq.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I./include      -Wall -DUNIX -D__USE_FIXED_PROTOTYPES__  -O3 -c `test -f 'ureadseq.c' || echo './'`ureadseq.c
gcc  -Wall -DUNIX -D__USE_FIXED_PROTOTYPES__  -O3   -o readseq  readseq.o ureadseq.o   -lm
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I./include      -Wall -DUNIX -D__USE_FIXED_PROTOTYPES__  -O3 -c `test -f 'meme-client.c' || echo './'`meme-client.c
In file included from meme-client.c:45:
./include/meme-cs.h:49: error: conflicting types for 'accept'
/usr/include/sys/socket.h:557: error: previous declaration of 'accept' was here
./include/meme-cs.h:50: error: conflicting types for 'bind'
/usr/include/sys/socket.h:558: error: previous declaration of 'bind' was here
./include/meme-cs.h:51: error: conflicting types for 'connect'
/usr/include/sys/socket.h:559: error: previous declaration of 'connect' was here
make[3]: *** [meme-client.o] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2

Could you suggest what I could do to get MEME to install?

Thanks,




Tom Keller, Ph.D.

http://www.ohsu.edu/research/core

[EMAIL PROTECTED]

503-494-2442


Reply via email to