Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4948
Modified Files: wise2.info Log Message: wise2 2.4.1 Index: wise2.info =================================================================== RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/wise2.info,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- wise2.info 9 Apr 2012 21:46:46 -0000 1.1 +++ wise2.info 26 Feb 2013 17:43:31 -0000 1.2 @@ -1,18 +1,29 @@ Package: wise2 -Version: 2.2.0 -Revision: 4 -Source: ftp://ftp.ebi.ac.uk/pub/software/unix/wise2/wise%v.tar.gz -Source-MD5: 0584240f77885e37528e99e64535ab60 +Version: 2.4.1 +Revision: 1 +#Source: ftp://ftp.ebi.ac.uk/pub/software/unix/wise2/wise%v.tar.gz +Source: http://www.ebi.ac.uk/~birney/wise2/wise%v.tar.gz +Source-MD5: d70c404c1dc40ceef7718757b11bdaa0 +BuildDepends: << + glib2-dev, + pkgconfig +<< +Depends: << + glib2-shlibs +<< PatchScript: << ## 10.7 has a getline function, but it doesn't function identically to the included ## getline, so instead of patching to use system-getline, rename the included ## function to eliminate conflicting declarations perl -pi -e 's|getline|wise2_getline|g' src/HMMer2/sqio.c + ### uses dead glib-config to get glib cflags and libs, so patch to use pkg-config + perl -pi -e 's|glib-config --cflags|pkg-config --cflags glib-2.0|g; s|glib-config --libs|pkg-config --libs glib-2.0|g' `grep -lr glib-config *` << CompileScript: << #!/bin/sh -ex cd src + export PKG_CONFIG_PATH=%p/lib/glib-2.0/pkgconfig-strict:$PKG_CONFIG_PATH make all export WISECONFIGDIR=%b/wisecfg/ make test @@ -26,10 +37,13 @@ mv wisecfg test_data %i/share/wise2/ mkdir -p %i/lib - mv src/base/libwisebase.a %i/lib - mv src/dynlibsrc/libdyna.a %i/lib - mv src/models/libmodel.a %i/lib - mv src/HMMer2/libhmmer.a %i/lib + cp src/base/libwisebase.a %i/lib + cp src/dynlibsrc/libdyna.a %i/lib + cp src/dynlibsrc/libdyna_glib.a %i/lib + cp src/external/mott/libmott.a %i/lib + cp src/models/libmodel.a %i/lib + cp src/socket/libwisesocket.a %i/lib + cp src/HMMer2/libhmmer.a %i/lib mkdir -p %i/include mv src/api/include/*.h %i/include @@ -59,6 +73,7 @@ << DescPort: << o rename getline() to wise2_getline() to avoid conflicting declarations with 10.7 getline() +o Change from obsolete glib-config to pkg-config << Description: Intelligent algorithms for DNA searches DescDetail: << ------------------------------------------------------------------------------ Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb _______________________________________________ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs