Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv17263
Modified Files:
wwwblast.info wwwblast.patch
Log Message:
Make this thing actually able to compile (API additions vs version in
external package it linked:(
Index: wwwblast.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/wwwblast.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- wwwblast.info 20 Jan 2006 20:30:41 -0000 1.1
+++ wwwblast.info 30 Mar 2006 07:29:00 -0000 1.2
@@ -1,11 +1,18 @@
Package: wwwblast
Version: 2.2.9
-Revision: 1
+Revision: 2
Source: ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/20040505/ncbi.tar.gz
SourceRename: %n-%v.tar.gz
Source-MD5: fd88e28e0d7323346731a8169c696b6d
SourceDirectory: ncbi/network/wwwblast
Patch: %n.patch
+PatchScript: <<
+ #!/bin/sh -ev
+ cd Src
+ ln -s ../../../api/txalign.c .
+ ln -s ../../../tools/xmlblast.c .
+ ln -s ../../../desktop/salogif.c .
+<<
Depends: ncbitools
CompileScript: <<
cp -p Src/Makefile Src/Makefile.old
@@ -178,5 +185,11 @@
For more information, see:
http://www.ncbi.nlm.nih.gov/BLAST/
<<
+DescPort: <<
+ dmacks: This package includes a newer ncbitools than fink's
+ "ncbitools" package and makes use of new APIs in it. So we build
+ those specific parts of the local ncbitools that have the new
+ functions that wwwblast needs.
+<<
Maintainer: Richard Graul <[EMAIL PROTECTED]>
Homepage: http://www.ncbi.nlm.nih.gov/BLAST/
Index: wwwblast.patch
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/wwwblast.patch,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- wwwblast.patch 20 Jan 2006 20:30:41 -0000 1.1
+++ wwwblast.patch 30 Mar 2006 07:29:00 -0000 1.2
@@ -1,5 +1,6 @@
---- wwwblast/Src/Makefile Fri Nov 21 13:10:56 2003
-+++ wwwblast/Src/Makefile Sun May 30 17:04:36 2004
+diff -Nurd -x'*~' wwwblast.orig/Src/Makefile wwwblast/Src/Makefile
+--- wwwblast.orig/Src/Makefile 2003-11-21 16:10:56.000000000 -0500
++++ wwwblast/Src/Makefile 2006-03-30 02:13:58.000000000 -0500
@@ -1,12 +1,12 @@
# Set the NCBI variable to your local path to the NCBI toolkit!
#NCBI =
@@ -29,15 +30,25 @@
#
CC=cc
-@@ -46,7 +46,7 @@
+@@ -46,15 +46,15 @@
LIBS = $(NCBI_LIBDIR)
DEBUG_FLAG = -O
# For MacOS, use the following line:
-#DEBUG_FLAG = -O2 -g
+DEBUG_FLAG = -O2 -g
- OBJ_FILES = wwwbutl.c $(LIBS)/ncbithr.o
+-OBJ_FILES = wwwbutl.c $(LIBS)/ncbithr.o
++OBJ_FILES = wwwbutl.c $(LIBS)/ncbithr.o txalign.o xmlblast.o salogif.o
+
+ # Defines:
+ # NCBI_CLIENT_SERVER - full NCBI Client/server including BLAST search
+ # NCBI_ENTREZ_CLIENT - Client server for gi/accession lookups
+-INCDIR = -I. -I$(NCBI_INCDIR)
++INCDIR = -I. -I../../../api -I../../../tools -I../../../desktop
-I$(NCBI_INCDIR)
+
+ # Additional include path for internal NCBI BLAST 2 sequences only.
+ # Comment out for standalone
@@ -63,17 +63,17 @@
CFLAGS = -c $(DEBUG_FLAG) $(INCDIR)
@@ -59,8 +70,21 @@
# For full NCBI Client-server model
#CFLAGS += -DNCBI_CLIENT_SERVER
---- wwwblast/index.html Tue Aug 6 12:03:51 2002
-+++ wwwblast/index.html Mon May 31 08:43:18 2004
+diff -Nurd -x'*~' wwwblast.orig/Src/viewgif.c wwwblast/Src/viewgif.c
+--- wwwblast.orig/Src/viewgif.c 2003-07-15 13:42:19.000000000 -0400
++++ wwwblast/Src/viewgif.c 2006-03-30 02:17:38.000000000 -0500
+@@ -1,6 +1,8 @@
+ #include <signal.h>
+ #include <fcntl.h>
+ #include <stdio.h>
++#include <stdlib.h>
++#include <string.h>
+
+ static void SigAlrmHandler(int);
+ static void SigTermHandler(int);
+diff -Nurd -x'*~' wwwblast.orig/index.html wwwblast/index.html
+--- wwwblast.orig/index.html 2002-08-06 15:03:51.000000000 -0400
++++ wwwblast/index.html 2006-03-30 01:59:16.000000000 -0500
@@ -9,20 +9,15 @@
<UL>
-------------------------------------------------------
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