Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs17.sourceforge.net:/tmp/cvs-serv12584

Modified Files:
        coot.info mmdb.info 
Added Files:
        clipper.info ssm.info gpp4.info 
Log Message:
upgrade coot and add streamlined dependencies

--- NEW FILE: gpp4.info ---
Package: gpp4
Version: 1.0.4
Revision: 5
Maintainer: W. G. Scott <[EMAIL PROTECTED]> 
# Maintainer: Morten Kjeldgaard <[EMAIL PROTECTED]>
DescPackaging: <<
 Based on package created by Morten Kjeldgaard <[EMAIL PROTECTED]> with minor
 edits to conform to standard Fink packaging requirements.
<<
Description: Library providing CCP4 functionality 
License: LGPL
Source: ftp://ftp.bioxray.au.dk/pub/mok/src/gpp4-%v.tar.gz
Source-MD5: 48931781425a5b79a8255ebefaed24b3
NoSourceDirectory: false
Depends: %N-shlibs (= %v-%r)
BuildDependsOnly: true
HomePage: http://www.bioxray.dk/~mok/gpp4
DocFiles: README AUTHORS NEWS COPYING
DescDetail: << 
The CCP4 software suite is based around a library of routines that
cover common tasks, such as file opening, parsing keyworded input,
reading and writing of standard data formats, applying symmetry
operations, etc. Programs in the suite call these routines which, as
well as saving the programmer some effort, ensure that the varied
programs in the suite have a similar look-and-feel.

The library contains several subcomponents: 
  * CMTZ library -- Contains a variety of functions for manipulating 
    the data structure, for example adding crystals, datasets or columns. 
    The data structure can be dumped to an output MTZ data file.
  * CMAP library -- Functions defining the C-level API for accessing 
    CCP4 map files.
  * CSYM library -- a collection of functions centred around a data file 
    syminfo.lib which is auto-generated from sgtbx (the Space Group Toolbox 
    of cctbx).
  * CCP4 utility library -- many utility functions which either give 
    specific CCP4 or platform independent functionality.
  * CCP4 Parser library -- provides CCP4-style parsing, as used for 
    processing keywords of CCP4 programs, MTZ header records, etc.
  * CCP4 resizable arrays -- defines an object and methods which looks 
    just like a simple C array, but can be resized at will without 
    incurring excessive overheads.
<<
CompileScript: <<
  ./configure --prefix=%p
  make
<<
InstallScript: <<
  make install DESTDIR=%d
<<
SplitOff: <<
  Package: %N-shlibs
  Files: <<
    lib/libgpp4.0.dylib
        lib/libgpp4.0.0.0.dylib
  <<
  Shlibs: <<
        %p/lib/libgpp4.0.dylib 1.0.0 %n (>= 1.0.4-2)
  <<
<<
SplitOff2: <<
Package: %N-dev
BuildDependsOnly: True
Conflicts: ccp4-onlylibs-dev  
Replaces: ccp4-onlylibs-dev
 Files: <<   
  lib/*.a
  lib/*.la
  include/gpp4/ccp4/*.h
  share/gpp4/default.def
  share/gpp4/environ.def
  share/gpp4/syminfo.lib
 <<
<<

 

Index: mmdb.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/mmdb.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- mmdb.info   26 Aug 2008 23:46:08 -0000      1.1
+++ mmdb.info   10 Sep 2008 08:14:02 -0000      1.2
@@ -1,6 +1,6 @@
 Package: mmdb
 Version: 1.12
-Revision: 1
+Revision: 5 
 # Maintainer: Morten Kjeldgaard <[EMAIL PROTECTED]>
 Maintainer: W. G. Scott <[EMAIL PROTECTED]> 
 DescPackaging: <<
@@ -43,12 +43,14 @@
 SplitOff: <<
   Package: %N-shlibs
   Files: lib/libmmdb.0.dylib lib/libmmdb.0.0.0.dylib
-  Shlibs: %p/lib/libmmdb.0.dylib 1.0.0 %n (>= 1.12-1)
+  Shlibs: %p/lib/libmmdb.0.dylib 1.0.0 %n (>= 1.12-2)
 <<
 SplitOff2: <<
 Package: %N-dev
 Depends: %N (= %v-%r)
 BuildDependsOnly: True
+Conflicts: ccp4-onlylibs-dev  
+Replaces: ccp4-onlylibs-dev
 Files: <<   
 include/mmdb/*.h
 lib/*.a

--- NEW FILE: clipper.info ---
Package: clipper
Epoch: 1
Version: 2.0.3
Revision: 5
BuildDepends: fftw (>= 2.1.5-1010) | fftw-mpi (>= 2.1.5-1010), mmdb-dev (>= 
1.12-5), ssm-dev (>= 0.1-5), gpp4-dev (>= 1.0.4-5)
Depends: %n-shlibs (>= 1:%v-%r), fftw-shlibs (>= 2.1.5-1010) | fftw-mpi-shlibs 
(>= 2.1.5-1010), mmdb-shlibs (>= 1.0.10-5), ssm-shlibs (>= 0.1-5), gpp4-shlibs 
(>= 1.0.4-5)
Maintainer: W. G. Scott <[EMAIL PROTECTED]> 
Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html 
Source: http://www.ysbl.york.ac.uk/~cowtan/%n/%n20ac.latest.tar.gz
Source-MD5: cf5746cd7e040180c1e4cb429c7b2ac1
NoSourceDirectory: true
DocFiles: README AUTHORS NEWS COPYING 
Description: Object-oriented crystallographic libraries
DescDetail: <<
The aim of the project is to produce a set of object-oriented libraries 
for the organisation of crystallographic data and the performance of
crystallographic computation. The libraries are designed as a framework 
for new crystallographic software, which will allow the full power of 
modern programming techniques to be exploited by the developer. 
<<
SetCFLAGS: -fno-strict-aliasing  -I%p/include -I%p/include/mmdb 
-I%p/include/ssm -I%p/include/gpp4/ccp4 -I/usr/include -I/usr/include/sys
SetLDFLAGS: -L/usr/lib    
License: LGPL
CompileScript: <<
  LDFLAGS="-L%p/lib" 
  ./configure  --prefix=%p --enable-shared --with-gpp4=%p --with-mmdb=%p 
--with-fftw=%p --enable-mmdb --enable-minimol --enable-cif --enable-cns 
--enable-gpp4
  perl -pi -e 's|examples||g' Makefile  
  make  
<<
InstallScript: <<
  make install DESTDIR=%d
<<
SplitOff: <<
  Package: %N-shlibs
  Files: <<
        lib/libclipper-ccp4.2.*dylib
        lib/libclipper-cif.2.*dylib
        lib/libclipper-cns.2.*dylib
        lib/libclipper-contrib.2.*dylib
        lib/libclipper-core.2.*dylib
        lib/libclipper-minimol.2.*dylib
        lib/libclipper-mmdb.2.*dylib
        lib/libclipper-phs.2.*dylib                                             
    
  <<
  Shlibs: <<
        %p/lib/libclipper-ccp4.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
        %p/lib/libclipper-cif.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
        %p/lib/libclipper-cns.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
        %p/lib/libclipper-contrib.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
        %p/lib/libclipper-core.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
        %p/lib/libclipper-minimol.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
        %p/lib/libclipper-mmdb.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
        %p/lib/libclipper-phs.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
  <<
<<
SplitOff2: <<
Package: %N-dev
BuildDependsOnly: True
Conflicts: ccp4-onlylibs-dev  
Replaces: ccp4-onlylibs-dev
 Files: <<   
  lib/*.a
  lib/*.la
  include/*
 <<
<<

Index: coot.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/coot.info,v
retrieving revision 1.85
retrieving revision 1.86
diff -u -d -r1.85 -r1.86
--- coot.info   8 Sep 2008 17:03:09 -0000       1.85
+++ coot.info   10 Sep 2008 08:14:02 -0000      1.86
@@ -1,10 +1,10 @@
 Package: coot
-Version: 0.5-pre-1-1377
-Revision: 1
+Version: 0.5-pre-1-1382
+Revision: 2
 GCC: 4.0 
-Source: 
http://www.ysbl.york.ac.uk/~emsley/software/pre-release/coot-0.5-pre-1-revision-1377.tar.gz
  
+Source: 
http://www.ysbl.york.ac.uk/~emsley/software/pre-release/coot-0.5-pre-1-revision-1382.tar.gz
  
 # Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-%v.tar.gz
-Source-MD5: f857261f25fe719ea5b309ddbd260078
+Source-MD5: bf54db93380c1e2d23515fa4ea46cf4f
 SourceDirectory: %n-0.5-pre-1
 Source2: http://www.ysbl.york.ac.uk/refmac/data/refmac5.4_dictionary.tar.gz
 Source2-MD5: 14b965dc5ab9762c819f632c133998b9
@@ -34,9 +34,16 @@
 ###############################################################################
 Recommends:  povray, ccp4, raster3d                        
 BuildDepends: <<
+ clipper-dev (>= 1:2.0.3-5)      ,
+ clipper     (>= 1:2.0.3-5)      ,
+ gpp4-dev (>= 1.0.4-5)           ,
+ gpp4     (>= 1.0.4-5)           ,
+ mmdb-dev (>= 1.12-5)            ,
+ mmdb     (>= 1.12-5)            ,
+ ssm-dev (>= 0.1-5)              ,
+ ssm     (>= 0.1-5)              ,
  atk1 (>= 1.20.0-1)              ,
  cairo (>= 1.6-1)                ,
- ccp4-onlylibs-dev  (>= 6.0.99-2),
  expat1                          ,
  fontconfig2-dev (>= 2.4.1-1)    ,
  freetype219 (>= 2.3.5-1)        ,
@@ -76,6 +83,10 @@
 #            
 # Note: gtkglext1 IS required at runtime for stereo functionality
 Depends: <<
+ clipper-shlibs (>= 1:2.0.3-5)    ,
+ gpp4-shlibs (>= 1.0.4-5)         ,
+ mmdb-shlibs (>= 1.12-5)          ,
+ ssm-shlibs (>= 0.1-5)            ,
  atk1-shlibs (>= 1.20.0-1)        ,
  coot-shlibs (= %v-%r)            ,
  freeglut-shlibs                  ,
@@ -122,7 +133,8 @@
 if [[ $(sw_vers -productVersion) < 10.5 ]]; then
     :
 else
-    patch -p1 < %a/%n-10.5.patch
+    :
+    # patch -p1 < %a/%n-10.5.patch
 fi
 perl -pi.bak -e 's|use-modules \(goosh\)|use-modules \(goosh goosh\)|g' 
scheme/coot-utils.scm
 #perl -pi.bak -e 's/include <malloc.h>//g' **/*.c
@@ -140,15 +152,16 @@
 # perl -pi.bak -e 's|have_guile_gui=no|have_guile_gui=yes|g' configure
 perl -pi -e "s|guile-config|guile-1.8-config|g" configure
 perl -pi -e 's|\(goosh\)|\(goosh goosh\)|g' configure
+perl -pi -e 's|lccp4c|lgpp4|g' configure
 ###
 <<
 ###############################################################################
 ConfigureParams: <<  
---with-mmdb-prefix=%p/share/xtal/ccp4-onlylibs-dev-6.0.99  \
---with-clipper-prefix=%p/share/xtal/ccp4-onlylibs-dev-6.0.99  \
---with-fftw=%p/share/xtal/ccp4-onlylibs-dev-6.0.99 \
+--with-gpp4=%p --with-mmdb=%p   \
+--with-clipper-prefix=%p  \
+--with-fftw=%p \
 --with-glut-prefix=%p --with-gl-prefix=/usr/X11R6 --with-gtk2 \
---with-gnomecanvas-prefix=%p 
--with-ssmlib-prefix=%p/share/xtal/ccp4-onlylibs-dev-6.0.99  \
+--with-gnomecanvas-prefix=%p --with-ssmlib-prefix=%p  \
 --with-imlib-prefix=%p --with-gtkgl-prefix=%p --with-glib-prefix=%p \
 --with-guile-gtk --with-guile-gtk-prefix=%p  \
 --with-gsl-prefix=%p --with-guile --with-python 
@@ -163,13 +176,18 @@
 export COOT_REFMAC_LIB_DIR=%p/share/coot/lib
 export 
PKG_CONFIG_PATH=%p/lib/pango-ft219/lib/pkgconfig:%p/lib/fontconfig2/lib/pkgconfig:%p/lib/freetype219/lib/pkgconfig:${PKG_CONFIG_PATH}
 FLIBS="-L%p/lib" \
-CPPFLAGS="-I%p/share/xtal/ccp4-onlylibs-dev-6.0.99/include 
-I%p/share/xtal/ccp4-onlylibs-dev-6.0.99/lib 
-I%p/share/xtal/ccp4-onlylibs-dev-6.0.99/lib/ssm -I%p/include 
-I/usr/X11R6/include" \
-LDFLAGS="-Wl,-dylib_file,%p/lib/pango-ft219/lib/libpango-1.0.dylib:%p/lib/pango-ft219/lib/libpangocairo-1.0.dylib:%p/lib/pango-ft219/lib/libpangoft2-1.0.dylib:%p/lib/pango-ft219/lib/libpangox-1.0.dylib:%p/lib/pango-ft219/lib/libpangoxft-1.0.dylib
 -L%p/lib/pango-ft219/lib -L%p/share/xtal/ccp4-onlylibs-dev-6.0.99/lib -L%p/lib 
-L/usr/lib -lSystemStubs -flat_namespace 
-L/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries" \
+CPPFLAGS="-I%p/include/mmdb -I%p/include/ssm -I%p/include/gpp4/ccp4 
-I%p/include/clipper -I%p/include -I/usr/X11R6/include" \
+LDFLAGS="-Wl,-dylib_file,%p/lib/libsfftw.2.0.7.dylib:%p/lib/libsrfftw.2.0.7.dylib:%p/lib/pango-ft219/lib/libpango-1.0.dylib:%p/lib/pango-ft219/lib/libpangocairo-1.0.dylib:%p/lib/pango-ft219/lib/libpangoft2-1.0.dylib:%p/lib/pango-ft219/lib/libpangox-1.0.dylib:%p/lib/pango-ft219/lib/libpangoxft-1.0.dylib
 -L%p/lib/pango-ft219/lib -L%p/lib -L/usr/lib -lSystemStubs -flat_namespace 
-L/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries" \
 CXX="/usr/bin/g++" \
 CC="/usr/bin/gcc" \
 PYTHON=%p/bin/python2.5 \
 DYLD_LIBRARY_PATH="" \
 ./configure %c
+#
+perl -pi -e 's|lrfftw |lsrfftw |g'                       **/Makefile
+perl -pi -e 's|lfftw |lsfftw |g'                         **/Makefile
+perl -pi -e 's|include <rfftw.h>|include <srfftw.h>|g'   
surface/CXXFFTSolventMap.h
+#
 # py_path="%p/bin/python2.5" \
 #
 #remake the  src/coot_wrap_python.cc and src/coot_wrap_guile.cc files
@@ -233,40 +251,39 @@
 SplitOff: <<
 Package: %N-shlibs
 Files: <<
-lib/libccp4mg-*.dylib  
-lib/libcoot-*.dylib  
-lib/libcootaneer*.dylib
+lib/libccp4mg-*.0*.dylib  
+lib/libcoot-*.0*.dylib  
+lib/libcootaneer.0*.dylib
 <<
     Shlibs: <<
-        %p/lib/libccp4mg-surface.0.dylib            1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libccp4mg-utils.0.dylib              1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-analysis.0.dylib             1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-AngleInfo.0.dylib            1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-atomutils.0.dylib            1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-cabuild.0.dylib              1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-compat.0.dylib               1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-coord-extras.0.dylib         1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-coord-utils.0.dylib          1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-coords.0.dylib               1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-db-main.0.dylib              1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-geometry.0.dylib             1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-high-res.0.dylib             1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-ideal.0.dylib                1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-isosurface.0.dylib           1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-ligand.0.dylib               1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-map-heavy.0.dylib            1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-map-utils.0.dylib            1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-mini-mol.0.dylib             1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-mmtz-extras.0.dylib          1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-sequence-view.0.dylib        1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-shelx.0.dylib                1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-skeleton.0.dylib             1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-surface.0.dylib              1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-tw.0.dylib                   1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-utils.0.dylib                1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-wrap-guile.0.dylib           1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcoot-wrap-python.0.dylib          1.0.0 %n (>= 
0.5-pre-1-1377-1)
-        %p/lib/libcootaneer.0.dylib                 1.0.0 %n (>= 
0.5-pre-1-1377-1)
+        %p/lib/libccp4mg-surface.0.dylib            1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libccp4mg-utils.0.dylib              1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-analysis.0.dylib             1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-AngleInfo.0.dylib            1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-atomutils.0.dylib            1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-cabuild.0.dylib              1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-compat.0.dylib               1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-coord-extras.0.dylib         1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-coord-utils.0.dylib          1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-coords.0.dylib               1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-db-main.0.dylib              1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-geometry.0.dylib             1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-high-res.0.dylib             1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-ideal.0.dylib                1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-isosurface.0.dylib           1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-ligand.0.dylib               1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-map-heavy.0.dylib            1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-map-utils.0.dylib            1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-mini-mol.0.dylib             1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-sequence-view.0.dylib        1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-shelx.0.dylib                1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-skeleton.0.dylib             1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-surface.0.dylib              1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-tw.0.dylib                   1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-utils.0.dylib                1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-wrap-guile.0.dylib           1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcoot-wrap-python.0.dylib          1.0.0 %n (>= 
0.5-pre-1-1382-1)
+        %p/lib/libcootaneer.0.dylib                 1.0.0 %n (>= 
0.5-pre-1-1382-1)
     <<
 DocFiles: README AUTHORS NEWS COPYING ABOUT-NLS BUGS TODO
 << 

--- NEW FILE: ssm.info ---
Package: ssm
Version: 0.1
Revision: 5
Maintainer: W. G. Scott <[EMAIL PROTECTED]> 
DescPackaging: <<
 Based on package created by Morten Kjeldgaard <[EMAIL PROTECTED]> with minor
 edits to conform to standard Fink packaging requirements. Hack of 
ssm_superpose.h
 in the install script is required to prevent run-time error in coot.
<<
# Maintainer: Morten Kjeldgaard <[EMAIL PROTECTED]>
Description: Macromolecular coordinate library
License: LGPL
HomePage: http://www.bioxray.dk/~mok/%N
Source: ftp://ftp.bioxray.au.dk/pub/mok/src/%N-%v.tar.gz
Source-MD5: 317d9cc78a88fa5652a4a4b06f329823
NoSourceDirectory: false
Depends: %n-shlibs (= %v-%r)
BuildDepends: mmdb-dev (>= 1.0.10-5)
BuildDependsOnly: true
DocFiles: README AUTHORS NEWS COPYING 
DescDetail: << 
SSM is a macromolecular coordinate superposition library, written by 
Eugene Krissinel of the EBI.

The library implements the SSM algorithm of protein structure
comparison in three dimensions, which includes an original procedure
of matching graphs built on the protein\'s secondary-structure
elements, followed by an iterative three-dimensional alignment of
protein backbone Calpha atoms. 

The algorithm implemented by the software is described in:
E. Krissinel & K. Henrick (2004) Secondary-structure matching (SSM), a
new tool for fast protein structure alignment in three dimensions.
Acta Crystallogr D Biol Crystallogr. 60, 2256-68.
<<
PatchScript: <<
#
# To avoid a conflict with python
#
    perl -pi -e 's|FF1|FF1RENAMED|g' src/ssm_superpose.*
    perl -pi -e 's|FF2|FF2RENAMED|g' src/ssm_superpose.*
#
<<
CompileScript: <<
  ./configure --prefix=%p
  make
<<
InstallScript: <<
  make install DESTDIR=%d
<<
SplitOff: <<
  Package: %N-shlibs
  Files: <<
    lib/libssm.0.dylib 
    lib/libssm.0.0.0.dylib
  <<
  Shlibs: <<
    %p/lib/libssm.0.dylib 1.0.0 %n (>= 0.1-3)
  <<
<<
SplitOff2: <<
Package: %N-dev
BuildDependsOnly: True
Conflicts: ccp4-onlylibs-dev  
Replaces: ccp4-onlylibs-dev
 Files: <<   
  lib/*.a
  lib/*.la
  include/ssm/*.h
  lib/pkgconfig/ssm.pc
 <<
<<


-------------------------------------------------------------------------
This SF.Net email is sponsored by the Moblin Your Move Developer's challenge
Build the coolest Linux based applications with Moblin SDK & win great prizes
Grand prize is a trip for two to an Open Source event anywhere in the world
http://moblin-contest.org/redirect.php?banner_id=100&url=/
_______________________________________________
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
http://news.gmane.org/gmane.os.apple.fink.cvs

Reply via email to