Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv26651
Modified Files:
gromacs-mpi.info gromacs.info
Log Message:
replace with revision that builds
Index: gromacs.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/gromacs.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- gromacs.info 11 Sep 2009 03:32:49 -0000 1.3
+++ gromacs.info 5 Oct 2009 02:41:01 -0000 1.4
@@ -1,51 +1,66 @@
Package: gromacs
Version: 4.0.5
-Revision: 1000
-Depends: %N-shlibs (= %v-%r), fftw3-shlibs, x11, openmotif3-shlibs
-BuildDepends: fftw3, x11-dev
-BuildConflicts: gromacs-dev (<< %v-%r)
+Revision: 1004
+Depends: %N-shlibs (= %v-%r), fftw3-shlibs, x11, openmotif4-shlibs, gsl-shlibs
+BuildDepends: fftw3, x11-dev, gsl
+BuildConflicts: gromacs-dev (<< %v-%r), gromacs-mpi-dev, gromacs-mpi,
gromacs-mpi-openmpi-dev, gromacs-mpi-openmpi, gromacs-mpi-lammpi-dev,
gromacs-mpi-lammpi-dev
+Conflicts: gromacs-mpi-dev, gromacs-mpi, gromacs-mpi-openmpi-dev,
gromacs-mpi-openmpi, gromacs-mpi-lammpi-dev, gromacs-mpi-lammpi-dev
+Replaces: gromacs-mpi-dev, gromacs-mpi, gromacs-mpi-openmpi-dev,
gromacs-mpi-openmpi, gromacs-mpi-lammpi-dev, gromacs-mpi-lammpi-dev
BuildDependsOnly: false
Source: mirror:custom:%n-%v.tar.gz
CustomMirror: <<
Primary: ftp://ftp.gromacs.org/pub/gromacs/
<<
Source-MD5: 2db2261852a4d3a97547979f379dee94
-ConfigureParams: --enable-shared --prefix=%p --exec-prefix=%p --mandir=%p/share
+ConfigureParams: --enable-shared --prefix=%p --exec-prefix=%p
--mandir=%p/share --with-x --with-gsl --x-includes=/usr/X11/include
--x-libraries=/usr/X11/lib
DocFiles: AUTHORS COPYING README
PatchScript: <<
#!/bin/zsh -efv
+perl -pi.bak -e 's|512|4096|g' src/gmxlib/futil.c
perl -pi.bak -e 's|/bin/csh|/bin/csh -f|g' share/**/* 2>/dev/null
perl -pi.bak -e 's|/lib/cpp|/usr/bin/cpp|g' share/**/* 2>/dev/null
<<
CompileScript: <<
-#!/bin/bash -ev
-if [ `uname -p` = "powerpc" ]; then
-./configure %c --enable-ppc-altivec
+#!/bin/bash -efv
+
+flag64=""
+if [[ %m == "x86_64" ]]; then
+ flag64="--enable-apple-64bit"
+fi
+
+if [[ $(uname -p) == "powerpc" ]]; then
+./configure %c --enable-ppc-altivec
else
-./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.`
--host=%m-apple-darwin`uname -r|cut -f1 -d.`
+./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.`
--host=%m-apple-darwin`uname -r|cut -f1 -d.` $flag64
fi
num_cpu=$(echo `sysctl -n hw.ncpu`)
make -j $num_cpu
<<
InstallScript: <<
-#!/bin/bash -ev
+#!/bin/bash -efv
+
+flag64=""
+if [[ %m == "x86_64" ]]; then
+ flag64="--enable-apple-64bit"
+fi
+
mkdir -p %i/include/%n
make install DESTDIR=%d
make clean
-if [ `uname -p` = "powerpc" ]; then
+if [[ $(uname -p) == "powerpc" ]]; then
./configure %c --enable-ppc-altivec --disable-float --program-suffix="_d"
else
-./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.`
--host=%m-apple-darwin`uname -r|cut -f1 -d.` --disable-float
--program-suffix="_d"
+./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.`
--host=%m-apple-darwin`uname -r|cut -f1 -d.` --disable-float
--program-suffix="_d" $flag64
fi
num_cpu=$(echo `sysctl -n hw.ncpu`)
make -j $num_cpu
+make install DESTDIR=%d
<<
SplitOff: <<
Package: %N-shlibs
-Depends: fftw3-shlibs, x11, openmotif3-shlibs
+Depends: fftw3-shlibs, x11, openmotif4-shlibs
Files: <<
- lib/libgmx.5.0.0.dylib
lib/libgmx.5.dylib
lib/libgmxana.5.0.0.dylib
lib/libgmxana.5.dylib
@@ -70,7 +85,9 @@
<<
SplitOff2: <<
Package: %N-dev
-Depends: %N-shlibs (= %v-%r), fftw3-shlibs, x11, openmotif3-shlibs
+Depends: %N-shlibs (= %v-%r), fftw3-shlibs, x11, openmotif4-shlibs
+Conflicts: gromacs-mpi-shlibs, gromacs-mpi-lammpi-shlibs,
gromacs-mpi-openmpi-shlibs
+Replaces: gromacs-mpi-shlibs, gromacs-mpi-lammpi-shlibs,
gromacs-mpi-openmpi-shlibs
Files: <<
lib/*.a
lib/*.la
@@ -80,7 +97,24 @@
lib/libmd_d.dylib
lib/libgmx_d.dylib
lib/libgmxana_d.dylib
- lib/libmd_d.dylib
+<<
+BuildDependsOnly: True
+DocFiles: AUTHORS COPYING README
+<<
+SplitOff3: <<
+Package: %N-bin
+Conflicts: gromacs-mpi-lammpi-bin, gromacs-mpi-openmpi-bin, gromacs-mpi-bin
+Replaces: gromacs-mpi-lammpi-bin, gromacs-mpi-openmpi-bin, gromacs-mpi-bin
+Files: <<
+ bin/GMXRC
+ bin/GMXRC.bash
+ bin/GMXRC.csh
+ bin/GMXRC.zsh
+ bin/completion.bash
+ bin/completion.csh
+ bin/completion.zsh
+ bin/xplor2gmx.pl
+ bin/demux.pl
<<
BuildDependsOnly: True
DocFiles: AUTHORS COPYING README
@@ -90,8 +124,8 @@
GROMACS is a versatile and extremely well optimized package
to perform molecular dynamics computer simulations and
subsequent trajectory analysis. It is developed for
-biomolecules like proteins, but the extremely high
-performance means it is used also in several other field
+biomolecules like proteins, but the extremely high
+performance means it is used also in several other field
like polymer chemistry and solid state physics. This
version has the dynamic libs and executables.
The directories tutor, top, template and html are in
@@ -101,3 +135,4 @@
Homepage: http://www.gromacs.org
License: GPL
Maintainer: W. G. Scott <wgsc...@users.sourceforge.net>
+
Index: gromacs-mpi.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/gromacs-mpi.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- gromacs-mpi.info 11 Sep 2009 03:32:49 -0000 1.3
+++ gromacs-mpi.info 5 Oct 2009 02:41:01 -0000 1.4
@@ -1,51 +1,70 @@
Info2: <<
Package: gromacs-mpi-%type_pkg[handler]
Version: 4.0.5
-Revision: 1001
+Revision: 1004
Type: handler (lammpi openmpi)
-Depends: gromacs (>= %v), %N-shlibs (= %v-%r), fftw3-shlibs, x11,
openmotif3-shlibs, (%type_pkg[handler] = lammpi) lammpi (>= 7.1.2-1000),
(%type_pkg[handler] = openmpi) openmpi
-BuildDepends: fftw3, x11-dev, (%type_pkg[handler] = lammpi) lammpi-dev (>=
7.1.2-1000), (%type_pkg[handler] = openmpi) openmpi-dev, gromacs-dev (>= %v)
-BuildConflicts: gromacs-mpi-dev, (%type_pkg[handler] = lammpi) openmpi-dev,
(%type_pkg[handler] = openmpi) lammpi-dev
-Conflicts: gromacs-mpi, gromacs-mpi-lammpi, gromacs-mpi-openmpi
-Replaces: gromacs-mpi, gromacs-mpi-lammpi, gromacs-mpi-openmpi
+Depends: %N-shlibs (= %v-%r), gsl-shlibs,fftw3-shlibs, x11, openmotif4-shlibs,
(%type_pkg[handler] = lammpi) lammpi (>= 7.1.2-1000), (%type_pkg[handler] =
openmpi) openmpi
+BuildDepends: gsl, fftw3, x11-dev, (%type_pkg[handler] = lammpi) lammpi-dev
(>= 7.1.2-1000), (%type_pkg[handler] = openmpi) openmpi-dev
+BuildConflicts: gromacs-mpi-dev, (%type_pkg[handler] = lammpi) openmpi-dev,
(%type_pkg[handler] = openmpi) lammpi-dev, gromacs-dev
+Conflicts: gromacs-mpi, gromacs-mpi-lammpi, gromacs-mpi-openmpi, gromacs,
gromacs-dev
+Replaces: gromacs-mpi, gromacs-mpi-lammpi, gromacs-mpi-openmpi, gromacs,
gromacs-dev
BuildDependsOnly: false
Source: mirror:custom:gromacs-%v.tar.gz
CustomMirror: <<
Primary: ftp://ftp.gromacs.org/pub/gromacs/
<<
Source-MD5: 2db2261852a4d3a97547979f379dee94
-ConfigureParams: --enable-shared --prefix=%p --exec-prefix=%p
--mandir=%p/share --enable-mpi
+ConfigureParams: --enable-shared --prefix=%p --exec-prefix=%p
--mandir=%p/share --with-x --with-gsl --x-includes=/usr/X11/include
--x-libraries=/usr/X11/lib --enable-mpi
DocFiles: AUTHORS COPYING README
SetCPPFLAGS: -I%p/include/%type_raw[handler]
SetLDFLAGS: -L%p/lib/%type_raw[handler]
+PatchScript: <<
+#!/bin/zsh -efv
+perl -pi.bak -e 's|512|4096|g' src/gmxlib/futil.c
+perl -pi.bak -e 's|/bin/csh|/bin/csh -f|g' share/**/* 2>/dev/null
+perl -pi.bak -e 's|/lib/cpp|/usr/bin/cpp|g' share/**/* 2>/dev/null
+<<
CompileScript: <<
-#!/bin/bash -ev
- if [ `uname -p` = "powerpc" ]; then
+#!/bin/bash -efv
+
+flag64=""
+if [[ %m == "x86_64" ]]; then
+ flag64="--enable-apple-64bit"
+fi
+
+if [[ $(uname -p) == "powerpc" ]]; then
./configure %c --enable-ppc-altivec --program-suffix=_mpi
- else
- ./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.`
--host=%m-apple-darwin`uname -r|cut -f1 -d.` --program-suffix=_mpi
- fi
- num_cpu=$(echo `sysctl -n hw.ncpu`)
- make -j $num_cpu mdrun
+else
+ ./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.`
--host=%m-apple-darwin`uname -r|cut -f1 -d.` --program-suffix=_mpi $flag64
+fi
+num_cpu=$(echo `sysctl -n hw.ncpu`)
+make -j $num_cpu mdrun
<<
InstallScript: <<
-#!/bin/bash -ev
- make install-mdrun DESTDIR=%d
- make clean
+#!/bin/bash -efv
- if [ `uname -p` = "powerpc" ]; then
+flag64=""
+if [[ %m == "x86_64" ]]; then
+ flag64="--enable-apple-64bit"
+fi
+
+mkdir -p %i/include/%n
+make install DESTDIR=%d
+make clean
+
+if [[ $(uname -p) == "powerpc" ]]; then
./configure %c --enable-ppc-altivec --disable-float
--program-suffix="_mpi_d"
- else
- ./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.`
--host=%m-apple-darwin`uname -r|cut -f1 -d.` --disable-float
--program-suffix="_mpi_d"
- fi
+else
+ ./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.`
--host=%m-apple-darwin`uname -r|cut -f1 -d.` --disable-float $flag64
--program-suffix="_mpi_d"
+fi
num_cpu=$(echo `sysctl -n hw.ncpu`)
make -j $num_cpu mdrun
make install-mdrun DESTDIR=%d
<<
SplitOff: <<
Package: %N-shlibs
-Conflicts: gromacs-mpi-shlibs, gromacs-mpi-lammpi-shlibs,
gromacs-mpi-openmpi-shlibs
-Replaces: gromacs-mpi-shlibs, gromacs-mpi-lammpi-shlibs,
gromacs-mpi-openmpi-shlibs
+Conflicts: gromacs-mpi-shlibs, gromacs-mpi-lammpi-shlibs,
gromacs-mpi-openmpi-shlibs, gromacs-shlibs
+Replaces: gromacs-mpi-shlibs, gromacs-mpi-lammpi-shlibs,
gromacs-mpi-openmpi-shlibs, gromacs-shlibs
Depends: (%type_pkg[handler] = lammpi) lammpi (>= 7.1.2-1000),
(%type_pkg[handler] = openmpi) openmpi, fftw3-shlibs
Files: <<
lib/libgmx_mpi.5.0.0.dylib
@@ -67,8 +86,8 @@
<<
SplitOff2: <<
Package: %N-dev
-Conflicts: gromacs-mpi-dev, gromacs-mpi-lammpi-dev, gromacs-mpi-openmpi-dev
-Replaces: gromacs-mpi-dev, gromacs-mpi-lammpi-dev, gromacs-mpi-openmpi-dev
+Conflicts: gromacs-mpi-dev, gromacs-mpi-lammpi-dev, gromacs-mpi-openmpi-dev,
gromacs-dev
+Replaces: gromacs-mpi-dev, gromacs-mpi-lammpi-dev, gromacs-mpi-openmpi-dev,
gromacs-dev
Depends: %N-shlibs, fftw3-shlibs
Files: <<
lib/libgmx_mpi.dylib
@@ -87,6 +106,24 @@
BuildDependsOnly: True
DocFiles: AUTHORS COPYING README
<<
+SplitOff3: <<
+Package: %N-bin
+Conflicts: gromacs-bin
+Replaces: gromacs-bin
+Files: <<
+ bin/GMXRC
+ bin/GMXRC.bash
+ bin/GMXRC.csh
+ bin/GMXRC.zsh
+ bin/completion.bash
+ bin/completion.csh
+ bin/completion.zsh
+ bin/xplor2gmx.pl
+ bin/demux.pl
+<<
+BuildDependsOnly: True
+DocFiles: AUTHORS COPYING README
+<<
Description: Molecular dynamics package (Parallel version)
DescDetail: <<
GROMACS is a versatile and extremely well optimized package
------------------------------------------------------------------------------
Come build with us! The BlackBerry® Developer Conference in SF, CA
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developing skills, take BlackBerry mobile applications to market and stay
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