Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv11572
Modified Files: coot.info Log Message: coot upstream bug fixes for RNA real-space refinement Index: coot.info =================================================================== RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/coot.info,v retrieving revision 1.26 retrieving revision 1.27 diff -u -d -r1.26 -r1.27 --- coot.info 16 Dec 2010 14:53:30 -0000 1.26 +++ coot.info 18 Aug 2011 16:07:19 -0000 1.27 @@ -1,13 +1,13 @@ Package: coot -Version: 0.6.2-pre-1 -Revision: 290 +Version: 0.7-pre-1 +Revision: 628 SourceDirectory: %n-%v GCC: 4.0 -# Source: http://lmb.bioch.ox.ac.uk/%n/software/source/releases/%n-0.6.1.tar.gz -Source: http://lmb.bioch.ox.ac.uk/%n/software/source/pre-releases/%n-%v-revision-3290.tar.gz -Source-MD5: 5be756b3b65b3cf477bf328bd81dab41 -Source2: http://www.ysbl.york.ac.uk/refmac/data/refmac_dictionary.tar.gz -Source2-MD5: d6eab829728608d0b8eade38debcedd3 +#Source: http://lmb.bioch.ox.ac.uk/%n/software/source/releases/%n-0.6.2.tar.gz +Source: http://lmb.bioch.ox.ac.uk/%n/software/source/pre-releases/%n-%v-revision-3%r.tar.gz +Source-MD5: d9188ef3c9251f1930912392502d0caa +Source2: http://www.ysbl.york.ac.uk/~garib/refmac/data/refmac_experimental/refmac_dictionary_v5.29.tar.gz +Source2-MD5: bc3469d0c1ac4104a683b5dcf397edae Source3: http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz Source3-MD5: 257ab90d44f1c877ada96720dbb87c13 ############################################################################### @@ -20,8 +20,8 @@ to map contouring and importing/creation and other (modelling) operations. The mmdb, clipper, ssm and mccp4 libraries are provided in individual fink packages that replace the now obsolete ccp4-onlylibs-dev fink package. On-line -documentation is available from the coot Web via the help menu or via the web -site (see below) and is updated regularly. +documentation is available from the coot website accessed via the help menu, +or manually, via the web-site, (see below) and is updated regularly. . To have an Aqua-like Coot gtk+2 environment, issue the following command: echo "include \"%p/share/themes/Glossy_P/gtk-2.0/gtkrc\"">~/.gtkrc-2.0 @@ -52,7 +52,7 @@ giflib , glib2-dev (>= 2.14.0-1) , glitz , - gmp , + gmp5 , gsl , gtk+2 (>= 2.12.0-1) , gtk+2-dev (>= 2.12.0-1) , @@ -61,7 +61,6 @@ guile18-dev , guile18-lib , guile18-gtk-dev (>= 2.0-10) , - imlib , libart2 (>= 2.3.16-2) , libcurl4 , libgettext3-dev , @@ -71,7 +70,7 @@ libjpeg8 , libpng3 , librsvg2-gtk (>= 2.20.0-1) , - libtool14 , + libtool2 , libxml2 , pango1-xft2-ft219-dev (>= 1.18.4-1) , pixman (>= 0.10.0-1) , @@ -92,10 +91,10 @@ coot-shlibs (= %v-%r) , fftw-shlibs | fftw-mpi-shlibs , freeglut-shlibs , - gcc44-shlibs (>= 4.4.0-1000) , + gcc46-shlibs , giflib-shlibs , glib2-shlibs (>= 2.14.0-1) , - gmp-shlibs , + gmp5-shlibs , gnome-themes-glossy-p , gsl-shlibs , gtk+2-shlibs (>= 2.12.0-1) , @@ -106,7 +105,6 @@ guile18-gui , guile18-lib , guile18-shlibs , - imlib-shlibs , libart2-shlibs , libcurl4-shlibs , libgettext3-shlibs , @@ -116,7 +114,7 @@ libpng3-shlibs , librsvg2-shlibs (>= 2.20.0-1) , libtiff-shlibs , - libtool14-shlibs , + libtool2-shlibs , librsvg2-gtk (>= 2.20.0-1) , libxml2-shlibs , pango1-xft2-ft219-shlibs (>= 1.18.4-1) , @@ -140,7 +138,7 @@ --with-gpp4=%p --with-mmdb=%p --with-ssmlib-prefix=%p --with-clipper-prefix=%p \ --with-fftw=%p --with-gnomecanvas-prefix=%p --with-gtk2 --with-glut-prefix=%p \ --with-guile-gtk --with-guile-gtk-prefix=%p --with-gl-prefix=/usr/X11R6 \ ---with-imlib-prefix=%p --with-gtkgl-prefix=%p --with-glib-prefix=%p \ +--with-gtkgl-prefix=%p --with-glib-prefix=%p \ --with-gsl-prefix=%p --with-guile --with-python=%p --with-pygtk=%p << ############################################################################### @@ -161,7 +159,7 @@ export PKG_CONFIG_PATH=%p/lib/pango-ft219/lib/pkgconfig:%p/lib/fontconfig2/lib/pkgconfig:%p/lib/freetype219/lib/pkgconfig:%p/lib/pkgconfig:${PKG_CONFIG_PATH} FLIBS="-L%p/lib" \ CPPFLAGS="-I%p/include/libglade-2.0/glade -I%p/include/libglade-2.0 -I%p/include/python2.7 -I%p/include/mmdb -I%p/include/ssm -I%p/include/gpp4/ccp4 -I%p/include/clipper -I%p/include -I/usr/X11R6/include" \ - LDFLAGS="-Wl,-dylib_file,%p/lib/python2.7/config/libpython2.7.dylib:%p/lib/libsfftw.2.0.7.dylib:%p/lib/libsrfftw.2.0.7.dylib:%p/lib/pango-ft219/lib/libpango-1.0.dylib:%p/lib/pango-ft219/lib/libpangocairo-1.0.dylib:%p/lib/pango-ft219/lib/libpangoft2-1.0.dylib:%p/lib/pango-ft219/lib/libpangox-1.0.dylib:%p/lib/pango-ft219/lib/libpangoxft-1.0.dylib -L%p/lib/pango-ft219/lib -L%p/lib -L/usr/lib -lSystemStubs -flat_namespace -L/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries" \ + LDFLAGS="-Wl,-dylib_file,%p/lib/python2.7/config/libpython2.7.dylib:%p/lib/libsfftw.2.0.7.dylib:%p/lib/libsrfftw.2.0.7.dylib:%p/lib/pango-ft219/lib/libpango-1.0.dylib:%p/lib/pango-ft219/lib/libpangocairo-1.0.dylib:%p/lib/pango-ft219/lib/libpangoft2-1.0.dylib:%p/lib/pango-ft219/lib/libpangox-1.0.dylib:%p/lib/pango-ft219/lib/libpangoxft-1.0.dylib -L%p/lib/pango-ft219/lib -L%p/lib -L/usr/lib -flat_namespace -L/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries" \ DYLD_LIBRARY_PATH="" \ ./configure %c # @@ -201,7 +199,7 @@ # cp src/coot.py %i/share/coot/python/coot.py # This installs the refmac monomer library mkdir -p %i/share/coot/lib/data -cp -R ../dic %i/share/coot/lib/data/monomers +cp -R ../monomers %i/share/coot/lib/data/monomers cp %i/share/coot/lib/data/monomers/ener_lib.cif %i/share/coot/lib/. # Reference structures should be in %i/share/coot/reference-structures cp -R ../reference-structures %i/share/coot/. @@ -214,7 +212,8 @@ echo "export COOT_REFMAC_LIB_DIR=%p/share/coot/lib" >> %i/bin/coot echo "export COOT_PYTHON_DIR=%p/share/coot/python" >> %i/bin/coot echo 'export COOT_SBASE_DIR="$CCP4/share/sbase"' >> %i/bin/coot -echo "export PYTHONPATH=/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6:/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5:%p/lib/python2.7/site-packages:%p/lib/python2.7/site-packages/gtk-2.0:%p/share/coot/python:\$PYTHONPATH" >> %i/bin/coot +echo "export PYTHONPATH=%p/lib/python2.7/site-packages:%p/lib/python2.7/site-packages/gtk-2.0:%p/share/coot/python:\$PYTHONPATH" >> %i/bin/coot +#echo "export PYTHONPATH=/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6:/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5:%p/lib/python2.7/site-packages:%p/lib/python2.7/site-packages/gtk-2.0:%p/share/coot/python:\$PYTHONPATH" >> %i/bin/coot echo "%p/bin/coot-real \"\$@\" " >> %i/bin/coot chmod a+x %i/bin/coot # Clean up the rest of the mess. ------------------------------------------------------------------------------ Get a FREE DOWNLOAD! and learn more about uberSVN rich system, user administration capabilities and model configuration. 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