Hi, Maybe bioperl is not meant to work on 10.6, but I tried a completely fresh fink installation on 10.6 (32-bit fink), and then:
fink install bioperl-pm588 however, when I try to use a program that uses a bioperl module, it does: Can't locate Bio/SeqIO.pm in @INC (@INC contains: /sw/lib/perl5/darwin-thread-multi-2level /sw/lib/perl5 /sw/lib/perl5/darwin /Library/Perl/Updates/5.10.0/darwin-thread-multi-2level /Library/Perl/Updates/5.10.0 /System/Library/Perl/5.10.0/darwin-thread-multi-2level /System/Library/Perl/5.10.0 /Library/Perl/5.10.0/darwin-thread-multi-2level /Library/Perl/5.10.0 /Network/Library/Perl/5.10.0/darwin-thread-multi-2level /Network/Library/Perl/5.10.0 /Network/Library/Perl /System/Library/Perl/Extras/5.10.0/darwin-thread-multi-2level /System/Library/Perl/Extras/5.10.0 .) at gatherMitochondrialReads.pl line 25. The libraries themselves are in: /sw/lib/perl5/5.8.8 but if I add that to the PERL5LIB environmental variable, I now get: dyld: lazy symbol binding failed: Symbol not found: _Perl_Tstack_sp_ptr Referenced from: /sw/lib/perl5/5.8.8/darwin-thread-multi-2level/auto/IO/IO.bundle Expected in: dynamic lookup dyld: Symbol not found: _Perl_Tstack_sp_ptr Referenced from: /sw/lib/perl5/5.8.8/darwin-thread-multi-2level/auto/IO/IO.bundle Expected in: dynamic lookup Trace/BPT trap Is there anyway to get bioperl working on 10.6 within fink, or is it not currently supported? Many thanks in advance (and thanks for fink - I use it all the time). Cheers, Gavin ________________________________________________________ Gavin Sherlock Assistant Professor, Research Dept. of Genetics S201A, Grant Building, Stanford University Medical School, Stanford, CA 94305-5120 Tel: 650 498 6012 Fax: 650 724 3701 http://genome-www.stanford.edu/~sherlock ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ Fink-devel mailing list [email protected] http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
