Hi Richard,
Ncbitools package fails as follows on 10.5.8, unstable. I have the
following motif packages installed:
i openmotif3-shlibs 2.2.4-4 Official Implementation
of OSF/Motif
i openmotif4-shlibs 2.3.2-2 Official Implementation
of OSF/Motif
- Koen.
=======================
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include -
DWIN_MAC -I/Developer/Headers/FlatCarbon drwnflpt.c
In file included from drwnflpt.c:4:
FullPath.c: In function 'FSpGetFullPath':
FullPath.c:167: warning: 'PBGetCatInfoSync' is deprecated (declared
at /System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:8697)
FullPath.c:191: warning: 'PBGetCatInfoSync' is deprecated (declared
at /System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:8697)
FullPath.c: In function 'FSpLocationFromFullPath':
FullPath.c:241: warning: 'NewAliasMinimalFromFullPath' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Aliases.h:899)
FullPath.c:245: warning: 'ResolveAlias' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Aliases.h:925)
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include -
DWIN_MAC -I/Developer/Headers/FlatCarbon drwnfspc.c
In file included from drwnfspc.c:4:
FSpCompat.c: In function 'FSMakeFSSpecCompat':
FSpCompat.c:254: warning: 'FSMakeFSSpec' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:10072)
FSpCompat.c: In function 'FSpOpenDFCompat':
FSpCompat.c:291: warning: 'FSpOpenDF' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:10091)
FSpCompat.c: In function 'FSpOpenRFCompat':
FSpCompat.c:320: warning: 'FSpOpenRF' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:10110)
FSpCompat.c: In function 'FSpCreateCompat':
FSpCompat.c:375: warning: 'FSpCreate' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:10130)
FSpCompat.c: In function 'FSpDirCreateCompat':
FSpCompat.c:421: warning: 'FSpDirCreate' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:10149)
FSpCompat.c: In function 'FSpDeleteCompat':
FSpCompat.c:443: warning: 'FSpDelete' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:10165)
FSpCompat.c: In function 'FSpGetFInfoCompat':
FSpCompat.c:470: warning: 'FSpGetFInfo' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:10183)
FSpCompat.c: In function 'FSpSetFInfoCompat':
FSpCompat.c:502: warning: 'FSpSetFInfo' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:10201)
FSpCompat.c: In function 'FSpSetFLockCompat':
FSpCompat.c:524: warning: 'FSpSetFLock' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:10217)
FSpCompat.c: In function 'FSpRstFLockCompat':
FSpCompat.c:546: warning: 'FSpRstFLock' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:10233)
FSpCompat.c: In function 'FSpRenameCompat':
FSpCompat.c:570: warning: 'FSpRename' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:10251)
FSpCompat.c: In function 'FSpCatMoveCompat':
FSpCompat.c:598: warning: 'FSpCatMove' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:10269)
FSpCompat.c: In function 'FSpExchangeFilesCompat':
FSpCompat.c:863: warning: 'FSpExchangeFiles' is deprecated (declared
at /System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:10287)
FSpCompat.c: In function 'FSpOpenResFileCompat':
FSpCompat.c:886: warning: 'FSpOpenResFile' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Resources.h:1233)
FSpCompat.c: In function 'FSpCreateResFileCompat':
FSpCompat.c:941: warning: 'FSpCreateResFile' is deprecated (declared
at /System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Resources.h:1253)
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include -
DWIN_MAC -I/Developer/Headers/FlatCarbon drwnmfls.c
In file included from MoreFilesX.c:60,
from drwnmfls.c:4:
../include/MoreFilesX.h:1467: error: conflicting types for
'FSVolumeMount'
/System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:7299: error: previous declaration
of 'FSVolumeMount' was here
In file included from drwnmfls.c:4:
MoreFilesX.c: In function 'FSGetVolParms':
MoreFilesX.c:219: warning: 'PBHGetVolParmsSync' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Files.h:7607)
MoreFilesX.c: In function 'FSMakeFSRef':
MoreFilesX.c:425: warning: 'PBMakeFSRefSync' is deprecated (declared
at /System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:7492)
MoreFilesX.c: In function 'UnicodeNameGetHFSName':
MoreFilesX.c:531: warning: 'GetScriptManagerVariable' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Script.h:993)
MoreFilesX.c:532: warning: 'GetScriptManagerVariable' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Script.h:993)
MoreFilesX.c: In function 'HFSNameGetUnicodeName':
MoreFilesX.c:608: warning: 'GetScriptManagerVariable' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Script.h:993)
MoreFilesX.c:609: warning: 'GetScriptManagerVariable' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Script.h:993)
MoreFilesX.c: In function 'FSBumpDate':
MoreFilesX.c:1003: warning: 'GetUTCDateTime' is deprecated (declared
at /System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/UTCUtils.h:181)
MoreFilesX.c: In function 'FSMoveRenameObjectUnicode':
MoreFilesX.c:1396: warning: 'NumToString' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/NumberFormatting.h:170)
MoreFilesX.c:1401: warning: 'DirCreate' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:9303)
MoreFilesX.c:1427: warning: 'HDelete' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:9322)
MoreFilesX.c:1457: warning: 'HDelete' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:9322)
MoreFilesX.c: In function 'MF_FSLockRange':
MoreFilesX.c:2149: warning: 'PBLockRangeSync' is deprecated (declared
at /System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:8484)
MoreFilesX.c: In function 'MF_FSUnlockRange':
MoreFilesX.c:2172: warning: 'PBUnlockRangeSync' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Files.h:8516)
MoreFilesX.c: In function 'FSGetDirAccess':
MoreFilesX.c:2201: warning: 'PBHGetDirAccessSync' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Files.h:7786)
MoreFilesX.c: In function 'FSSetDirAccess':
MoreFilesX.c:2257: warning: 'PBHSetDirAccessSync' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Files.h:7816)
MoreFilesX.c: In function 'FSGetVolMountInfoSize':
MoreFilesX.c:2282: warning: 'PBGetVolMountInfoSize' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Files.h:7638)
MoreFilesX.c: In function 'FSGetVolMountInfo':
MoreFilesX.c:2307: warning: 'PBGetVolMountInfo' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Files.h:7653)
MoreFilesX.c: At top level:
MoreFilesX.c:2322: error: conflicting types for 'FSVolumeMount'
/System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:7299: error: previous declaration
of 'FSVolumeMount' was here
MoreFilesX.c: In function 'FSVolumeMount':
MoreFilesX.c:2330: warning: 'PBVolumeMount' is deprecated (declared
at /System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:7665)
MoreFilesX.c: In function 'FSMapID':
MoreFilesX.c:2362: warning: 'PBHMapIDSync' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:7846)
MoreFilesX.c: In function 'FSMapName':
MoreFilesX.c:2390: warning: 'PBHMapNameSync' is deprecated (declared
at /System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:7876)
MoreFilesX.c: In function 'FSCopyFile':
MoreFilesX.c:2454: warning: 'PBHCopyFileSync' is deprecated (declared
at /System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:7906)
MoreFilesX.c: In function 'FSMoveRename':
MoreFilesX.c:2526: warning: 'PBHMoveRenameSync' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Files.h:9489)
MoreFilesX.c: In function 'FSResolveFileIDRef':
MoreFilesX.c:2569: warning: 'PBResolveFileIDRefSync' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Files.h:7966)
MoreFilesX.c: In function 'FSCreateFileIDRef':
MoreFilesX.c:2605: warning: 'PBCreateFileIDRefSync' is deprecated
(declared at /System/Library/Frameworks/CoreServices.framework/
Frameworks/CarbonCore.framework/Headers/Files.h:7936)
MoreFilesX.c: In function 'GetTempBuffer':
MoreFilesX.c:2659: warning: 'FreeMem' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/MacMemory.h:1041)
MoreFilesX.c:2661: warning: 'MaxBlock' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/MacMemory.h:628)
MoreFilesX.c: In function 'FSSetDefault':
MoreFilesX.c:2727: warning: 'HGetVol' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:9181)
MoreFilesX.c:2735: warning: 'HSetVol' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:8303)
MoreFilesX.c: In function 'FSRestoreDefault':
MoreFilesX.c:2771: warning: 'HSetVol' is deprecated (declared at /
System/Library/Frameworks/CoreServices.framework/Frameworks/
CarbonCore.framework/Headers/Files.h:8303)
make: *** [drwnmfls.o] Error 1
Fatal error building NCBI core libraries.
Please be sure that you have X11 and Motif libraries installed.
The NCBI toolkit FAQ at ftp://ncbi.nlm.nih.gov/toolbox/FAQ.html may be
helpful.
### execution of ncbi/make/makedis.csh failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-ncbitools-2.2.6-1003
(Reading database ... 139176 files and directories currently installed.)
Removing fink-buildlock-ncbitools-2.2.6-1003 ...
Failed: phase compiling: ncbitools-2.2.6-1003 failed
Before reporting any errors, please run "fink selfupdate" and
try again. If you continue to have issues, please check to see if the
FAQ on fink's website solves the problem. If not, ask on the fink-users
or fink-beginners mailing lists, with a carbon copy to the maintainer:
Richard Graul <[email protected]>
Note that this is preferable to emailing the maintainer directly, since
most fink package maintainers do not have access to all possible
hardware and software configurations.
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