Are you using the i386 or x86_64 architecture of fink?
On Sep 27, 2010, at 9:35 PM, BABA Yoshihiko wrote:
> Hi all,
>
> I installed r-base, then tried to install its packages inside R environment,
> with the error below. The binary version of R didn't have such error. Would
> it be Fink's problem?
>
>
>
>
> R version 2.11.0 (2010-04-22)
> Copyright (C) 2010 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
>
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
>
> Natural language support but running in an English locale
>
> R is a collaborative project with many contributors.
> Type 'contributors()' for more information and
> 'citation()' on how to cite R or R packages in publications.
>
> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
>
> > install.packages("sp")
> --- Please select a CRAN mirror for use in this session ---
> Loading Tcl/Tk interface ... done
> trying URL 'http://essrc.hyogo-u.ac.jp/cran/src/contrib/sp_0.9-69.tar.gz'
> Content type 'application/x-gzip' length 536637 bytes (524 Kb)
> opened URL
> ==================================================
> downloaded 524 Kb
>
> * installing *source* package ‘sp’ ...
> ** libs
> gcc -std=gnu99 -I/sw/Library/Frameworks/R.framework/Resources/include
> -I/sw/include -fPIC -g -O2 -c Rcentroid.c -o Rcentroid.o
> gcc -std=gnu99 -I/sw/Library/Frameworks/R.framework/Resources/include
> -I/sw/include -fPIC -g -O2 -c gcdist.c -o gcdist.o
> gcc -std=gnu99 -I/sw/Library/Frameworks/R.framework/Resources/include
> -I/sw/include -fPIC -g -O2 -c init.c -o init.o
> gcc -std=gnu99 -I/sw/Library/Frameworks/R.framework/Resources/include
> -I/sw/include -fPIC -g -O2 -c pip.c -o pip.o
> gcc -std=gnu99 -I/sw/Library/Frameworks/R.framework/Resources/include
> -I/sw/include -fPIC -g -O2 -c pip2.c -o pip2.o
> gcc -std=gnu99 -I/sw/Library/Frameworks/R.framework/Resources/include
> -I/sw/include -fPIC -g -O2 -c sp_xports.c -o sp_xports.o
> gcc -std=gnu99 -I/sw/Library/Frameworks/R.framework/Resources/include
> -I/sw/include -fPIC -g -O2 -c surfaceArea.c -o surfaceArea.o
> gcc -std=gnu99 -I/sw/Library/Frameworks/R.framework/Resources/include
> -I/sw/include -fPIC -g -O2 -c zerodist.c -o zerodist.o
> gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined
> dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o sp.so
> Rcentroid.o gcdist.o init.o pip.o pip2.o sp_xports.o surfaceArea.o zerodist.o
> -F/sw/Library/Frameworks/R.framework/.. -framework R -lintl -Wl,-framework
> -Wl,CoreFoundation
> ld: warning: in /sw/Library/Frameworks/R.framework/R, file was built for i386
> which is not the architecture being linked (x86_64)
> ld: warning: in /sw/lib/libintl.dylib, file was built for i386 which is not
> the architecture being linked (x86_64)
> installing to
> /sw/Library/Frameworks/R.framework/Versions/2.11/Resources/library/sp/libs
> ** R
> ** data
> ** demo
> ** inst
> ** preparing package for lazy loading
> ** help
> *** installing help indices
> ** building package indices ...
> ** testing if installed package can be loaded
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> unable to load shared library
> '/sw/Library/Frameworks/R.framework/Versions/2.11/Resources/library/sp/libs/sp.so':
>
> dlopen(/sw/Library/Frameworks/R.framework/Versions/2.11/Resources/library/sp/libs/sp.so,
> 6): no suitable image found. Did find:
>
> /sw/Library/Frameworks/R.framework/Versions/2.11/Resources/library/sp/libs/sp.so:
> mach-o, but wrong architecture
> ERROR: loading failed
> * removing
> ‘/sw/Library/Frameworks/R.framework/Versions/2.11/Resources/library/sp’
>
> The downloaded packages are in
>
> ‘/private/var/folders/FF/FFUvwZUMHNy0Shp4TusaJk+++TI/-Tmp-/RtmpRd78TR/downloaded_packages’
> Updating HTML index of packages in '.Library'
> Warning message:
> In install.packages("sp") :
> installation of package 'sp' had non-zero exit status
> >
>
>
> --
> BABA Yoshihiko
> http://homepage.mac.com/babayoshihiko
> ------------------------------------------------------------------------------
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