On 5/23/14, 8:19 AM, Jack Howarth wrote: > Is there a solution the following dilemma in the tomcat[6,7,8\. > tomcat[6,7,8]-webapps and metaboanalyst-tomcat[6,7,8]-r[30.31] packages? > While the following fink commands properly resolve the package > dependencies and conflicts… > > % fink install tomcat6-webapps > Information about 10283 packages read in 2 seconds. > The following package will be installed or updated: > tomcat6-webapps > The following additional package will be installed: > tomcat6 > Do you want to continue? [Y/n] > Reading buildlock packages... > /sw/bin/dpkg-lockwait -i > /sw/fink/dists/stable/main/binary-darwin-x86_64/web/tomcat6-webapps_6.0.39-2_darwin-x86_64.deb > /sw/fink/dists/stable/main/binary-darwin-x86_64/web/tomcat6_6.0.39-2_darwin-x86_64.deb > dpkg: considering removing tomcat8-webapps in favour of tomcat6-webapps ... > dpkg: yes, will remove tomcat8-webapps in favour of tomcat6-webapps. > (Reading database ... 363596 files and directories currently installed.) > Unpacking tomcat6-webapps (from > .../tomcat6-webapps_6.0.39-2_darwin-x86_64.deb) ... > dpkg: considering removing tomcat8 in favour of tomcat6 ... > dpkg: yes, will remove tomcat8 in favour of tomcat6. > Unpacking tomcat6 (from .../tomcat6_6.0.39-2_darwin-x86_64.deb) ... > Setting up tomcat6 (6.0.39-2) ... > > Setting up tomcat6-webapps (6.0.39-2) ... > Installing new version of config file > /sw/share/webapps/host-manager/manager.xml ... > > % fink install tomcat7-webapps > Information about 10283 packages read in 1 seconds. > The following package will be installed or updated: > tomcat7-webapps > The following additional package will be installed: > tomcat7 > Do you want to continue? [Y/n] > Reading buildlock packages... > /sw/bin/dpkg-lockwait -i > /sw/fink/dists/stable/main/binary-darwin-x86_64/web/tomcat7-webapps_7.0.53-2_darwin-x86_64.deb > /sw/fink/dists/stable/main/binary-darwin-x86_64/web/tomcat7_7.0.53-2_darwin-x86_64.deb > dpkg: considering removing tomcat6-webapps in favour of tomcat7-webapps ... > dpkg: yes, will remove tomcat6-webapps in favour of tomcat7-webapps. > (Reading database ... 363443 files and directories currently installed.) > Unpacking tomcat7-webapps (from > .../tomcat7-webapps_7.0.53-2_darwin-x86_64.deb) ... > dpkg: considering removing tomcat6 in favour of tomcat7 ... > dpkg: yes, will remove tomcat6 in favour of tomcat7. > Unpacking tomcat7 (from .../tomcat7_7.0.53-2_darwin-x86_64.deb) ... > Setting up tomcat7 (7.0.53-2) ... > > Setting up tomcat7-webapps (7.0.53-2) ... > Installing new version of config file > /sw/share/webapps/host-manager/manager.xml ... > > h% fink install tomcat8-webapps > Information about 10283 packages read in 1 seconds. > The following package will be installed or updated: > tomcat8-webapps > The following additional package will be installed: > tomcat8 > Do you want to continue? [Y/n] > Reading buildlock packages... > /sw/bin/dpkg-lockwait -i > /sw/fink/dists/stable/main/binary-darwin-x86_64/web/tomcat8-webapps_8.0.5-3_darwin-x86_64.deb > /sw/fink/dists/stable/main/binary-darwin-x86_64/web/tomcat8_8.0.5-3_darwin-x86_64.deb > dpkg: considering removing tomcat7-webapps in favour of tomcat8-webapps ... > dpkg: yes, will remove tomcat7-webapps in favour of tomcat8-webapps. > (Reading database ... 363599 files and directories currently installed.) > Unpacking tomcat8-webapps (from > .../tomcat8-webapps_8.0.5-3_darwin-x86_64.deb) ... > dpkg: considering removing tomcat7 in favour of tomcat8 ... > dpkg: yes, will remove tomcat7 in favour of tomcat8. > Unpacking tomcat8 (from .../tomcat8_8.0.5-3_darwin-x86_64.deb) ... > Setting up tomcat8 (8.0.5-3) ... > > Setting up tomcat8-webapps (8.0.5-3) ... > Installing new version of config file > /sw/share/webapps/host-manager/manager.xml ... > > ...when you try to do the same with the > metaboanalyst-tomcat[6,7,8]-r[30.31], fink fails to resolve the > cascading dependencies and conflicts… > > % fink install metaboanalyst-tomcat8-r31 > Information about 10283 packages read in 1 seconds. > The following package will be installed or updated: > metaboanalyst-tomcat8-r31 > Reading buildlock packages... > /sw/bin/dpkg-lockwait -i > /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/metaboanalyst-tomcat8-r31_2.0-2_darwin-x86_64.deb > Selecting previously deselected package metaboanalyst-tomcat8-r31. > (Reading database ... 363596 files and directories currently installed.) > Unpacking metaboanalyst-tomcat8-r31 (from > .../metaboanalyst-tomcat8-r31_2.0-2_darwin-x86_64.deb) ... > Setting up metaboanalyst-tomcat8-r31 (2.0-2) ... > MetaboAnalyst 2.0 installed for the combination of > the tomcat8 and the r-base3.1 R server. > The local MetaboAnalyst 2.0 server is started by... > 1) Start the tomcat8 first with... > sudo -u tomcat tomcat8 start > 2) Start the Rserver next with... > sudo -u tomcat R-3.1 > and then enter... > library(Rserve) > Rserve() > at the R prompt. Leave the terminal window open > to monitor R messages from MetaboAnalyst 2.0. > 3) Access the MetaboAnalyst 2.0 server via the url > http://localhost:8080/MetaboAnalyst/ > % fink install metaboanalyst-tomcat7-r31 > Information about 10283 packages read in 1 seconds. > The following package will be installed or updated: > metaboanalyst-tomcat7-r31 > The following 2 additional packages will be installed: > tomcat7 tomcat7-webapps > Do you want to continue? [Y/n] > Reading buildlock packages... > Could not resolve inconsistent dependencies! > > Fink isn't sure how to install the above packages safely. You may be > able to fix things by running: > > fink scanpackages > sudo apt-get update > sudo apt-get install tomcat7-webapps=7.0.53-2 tomcat7=7.0.53-2 > > Failed: Fink::SysState: Could not resolve inconsistent dependencies > > Is this beyond fink's capabilities or is there some trick which will > allow the installation of a different tomcat variant of > metaboanalyst-tomcat*-r* to properly remove the conflicting > tomcat*/tomcat*-webapps packages? > > >
It's beyond fink's capabilities. apt-get _might_ be able to handle the cascade properly, but otherwise the best thing to do right now for a swap is to do a recursive remove on the lowest-level dependency (tomcatN, I asssume) and then install the metaboanalyst package you want to swap to. -- Alexander Hansen, Ph.D. Fink User Liaison My package updates: http://finkakh.wordpress.com/ ------------------------------------------------------------------------------ "Accelerate Dev Cycles with Automated Cross-Browser Testing - For FREE Instantly run your Selenium tests across 300+ browser/OS combos. Get unparalleled scalability from the best Selenium testing platform available Simple to use. Nothing to install. Get started now for free." http://p.sf.net/sfu/SauceLabs _______________________________________________ Fink-devel mailing list Fink-devel@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
