% xcode-select --version
xcode-select version 2311.

But xcode-select in /usr/bin is a symlink to xcrun.  This is installed as part 
of the base OS X 10.8.5.
It does not get changed by Xcode 5 which is a drag install from the developer 
disk image.  Dragging the Xcode 5 application to the Applications folder will 
not change x-code select.

Either way, I did a command line tool update by running Xcode and then using 
the preferences to update the command line tools.

Re-install Xcode 5.1.1 as a drag install from developer download.  Open and 
install system components.

Same issues.  Many packages install.
Ghostscript for example works fine and updates.  Same with numpy-py27, openssl

The PATH looks correct?
% fink dumpinfo -ePATH python27
Information about 10616 packages read in 1 seconds.
PATH=/sw/var/lib/fink/path-prefix-clang:/sw/bin:/sw/sbin:/bin:/usr/bin:/sbin:/usr/sbin:/usr/X11R6/bin

This is the same path for ghostscript which compiles correctly.  But this is a 
shell execute path and not a header file path.

Three packages that I normal install don't work and all have issues finding an 
Apple specific header file.  These are Libcurl, python27 and gnuplot-minimal.

Libcurl:
libtool: compile:  gcc -DHAVE_CONFIG_H -I../include/curl -I../include 
-I../include -I../lib -I../lib -DBUILDING_LIBCURL -DCURL_HIDDEN_SYMBOLS 
-isystem /sw/include -I/sw/include -I/sw/include -fvisibility=hidden -Os 
-Qunused-arguments -MT libcurl_la-timeval.lo -MD -MP -MF 
.deps/libcurl_la-timeval.Tpo -c timeval.c  -fno-common -DPIC -o 
.libs/libcurl_la-timeval.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I../include/curl -I../include 
-I../include -I../lib -I../lib -DBUILDING_LIBCURL -DCURL_HIDDEN_SYMBOLS 
-isystem /sw/include -I/sw/include -I/sw/include -fvisibility=hidden -Os 
-Qunused-arguments -MT libcurl_la-file.lo -MD -MP -MF .deps/libcurl_la-file.Tpo 
-c file.c  -fno-common -DPIC -o .libs/libcurl_la-file.o
In file included from file.c:52:
../lib/urldata.h:163:10: fatal error: 'Security/Security.h' file not found
#include <Security/Security.h>
         ^

python (python27):
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall 
-Wstrict-prototypes -I. -IInclude -I./Include -I/sw/include 
-I/sw/src/fink.build/python27-2.7.7-3/Python-2.7.7/Include 
-I/sw/src/fink.build/python27-2.7.7-3/Python-2.7.7 -c ./Mac/Modules/_scproxy.c 
-o build/temp.macosx-10.8-x86_64-2.7/./Mac/Modules/_scproxy.o
./Mac/Modules/_scproxy.c:6:10: fatal error: 
'SystemConfiguration/SystemConfiguration.h' file not found
#include <SystemConfiguration/SystemConfiguration.h>
         ^
1 error generated.

gnuplot-minimal:
ngcc -DHAVE_CONFIG_H -I. -I..  -I../term -I../term -DBINDIR=\"/sw/bin\" 
-DX11_DRIVER_DIR=\"/sw/lib/gnuplot/4.6\" 
-DQT_DRIVER_DIR=\"/sw/lib/gnuplot/4.6\" 
-DGNUPLOT_SHARE_DIR=\"/sw/share/gnuplot/4.6\" 
-DGNUPLOT_PS_DIR=\"/sw/share/gnuplot/4.6/PostScript\" 
-DGNUPLOT_JS_DIR=\"/sw/share/gnuplot/4.6/js\" 
-DGNUPLOT_LUA_DIR=\"/sw/share/gnuplot/4.6/lua\" 
-DCONTACT=\"gnuplot-b...@lists.sourceforge.net\" 
-DHELPFILE=\"/sw/share/gnuplot/4.6/gnuplot.gih\" -DGNUPLOT_X11=\"`echo 
gnuplot_x11 | sed 's,x,x,'`\" -DXAPPLRESDIR=\"/etc/X11/app-defaults/\"  
-I/sw/include -I/sw/include -I/sw/include -I/sw/include   -g -O2 -ObjC -MT 
time.o -MD -MP -MF $depbase.Tpo -c -o time.o time.c &&\
        mv -f $depbase.Tpo $depbase.Po
In file included from term.c:1436:
In file included from ./term.h:163:
In file included from ../term/aquaterm.trm:97:
/sw/include/aquaterm/AQTAdapter.h:9:9: fatal error: 'Foundation/NSString.h' 
file not found
#import <Foundation/NSString.h>
        ^

Thanks for all the work in looking into this.  I am quite confused if the 
missing header files are due to my installation of Xcode or that those 
particular packages do not look for them in the new internal locations that 
Xcode 5 now stores them and are looking in the old /System/Library locations.

-Scott




On Jun 24, 2014, at 16:16, Merle Reinhart <merlereinh...@mac.com> wrote:

> xcode-select --install is the version of xcode-select that is installed with 
> Xcode 5.x.  The one without --install is from the Xcode 4.x chain.
> 
> Merle
> 
> 
> 
> On Jun 24, 2014, at 4:08 PM, Scott Hannahs <shann...@users.sourceforge.net> 
> wrote:
> 
>> I think the command is
>> /Applications/Xcode.app/Contents/MacOS/Xcode -installComponents
>> 
>> -Scott
>> 
>> On Jun 24, 2014, at 15:53, Scott Hannahs <shann...@users.sourceforge.net> 
>> wrote:
>> 
>>> I did that with the Xcode preferences.  My version of xcode-select does not 
>>> have an "install" option.
>>> 
>>> -Scott
>>> 
>>> 
>>> On Jun 24, 2014, at 12:29, Jack Howarth <howarth.at.f...@gmail.com> wrote:
>>> 
>>>> Scott,
>>>>      Make sure you also have the command line tools installed as well as 
>>>> the Xcode.app itself. You can do that with 'xcode-select --install'.
>>>>         Jack
>>>> 
>>>> On Tuesday, June 24, 2014, Scott Hannahs <shann...@users.sourceforge.net> 
>>>> wrote:
>>>> Daniel,
>>>> 
>>>> % fink list xcode
>>>> Information about 10616 packages read in 2 seconds.
>>>> i   xcode                                         5.1.0.0.1.1396320587-1   
>>>>           [virtual package representing the developer tools]
>>>> i   xcode.app                                     5.1.1-1                  
>>>>           [virtual package representing Xcode]
>>>> %
>>>> 
>>>> Hmm.  Bad Xcode installation?
>>>> 
>>>> The /System/Library/Frameworks/SystemConfiguration framework does not have 
>>>> a set of header files.
>>>> 
>>>> Let me try a removal and complete re-install of Xcode 5.1.1 as the next 
>>>> step.
>>>> 
>>>> -Scott
>>>> 
>>>> 
>>>> On Jun 24, 2014, at 09:30, Daniel Johnson <daniel.johnso...@gmail.com> 
>>>> wrote:
>>>> 
>>>>> 
>>>>> On Jun 24, 2014, at 12:05 AM, Alexander Hansen 
>>>>> <alexanderk.han...@gmail.com> wrote:
>>>>> 
>>>>>> On 6/23/14, 4:16 PM, Scott Hannahs wrote:
>>>>>>> I tried to update Python 2.7 and in amongst the long output I got a 
>>>>>>> missing header file error.
>>>>>>> 
>>>>>>> Mac OS X 10.8.5
>>>>>>> fink self-update was run just previous to an update-all
>>>>>>> 
>>>>>>> -Scott
>>>>>>> 
>>>>>>> 
>>>>>>> creating build/temp.macosx-10.8-x86_64-2.7/Mac/Modules
>>>>>>> gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall 
>>>>>>> -Wstrict-prototypes -I. -IInclude -I./Include -I/sw/include 
>>>>>>> -I/sw/src/fink.build/python27-2.7.7-3/Python-2.7.7/Include 
>>>>>>> -I/sw/src/fink.build/python27-2.7.7-3/Python-2.7.7 -c 
>>>>>>> ./Mac/Modules/_scproxy.c -o 
>>>>>>> build/temp.macosx-10.8-x86_64-2.7/./Mac/Modules/_scproxy.o
>>>>>>> ./Mac/Modules/_scproxy.c:6:10: fatal error: 
>>>>>>> 'SystemConfiguration/SystemConfiguration.h' file not found
>>>>>>> #include <SystemConfiguration/SystemConfiguration.h>
>>>>>>>        ^
>>>>>>> 1 error generated.
>>>>>>> building '_tkinter' extension
>>>>>>> 
>>>>>>> -
>>>>>> 
>>>>>> It appears that your build is trying to build a Mac-native Python, which 
>>>>>> isn't supposed to happen.  I'll cc the maintainer, since he may have 
>>>>>> received other reports about this issue.
>>>>> 
>>>>> No, I've never received a report like this. It looks like a bad Xcode 
>>>>> install to me. SystemConfiguration.h should NOT be missing. It's in the 
>>>>> SystemConfiguration framework and the compiler should find it. What does 
>>>>> 'fink list xcode' report?
>>>>> 
>>>>> Daniel


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