OK, It seems like this is a bug from apbs... And I found a patch from here. Now I can open the APBS plugin, but still need to test it to see if it's fully functional.
http://sourceforge.net/p/pymolapbsplugin/bugs/1/ On Wed, Oct 22, 2014 at 6:51 PM, Xiaoguang Xue <bio...@gmail.com> wrote: > After upgrade the pymol on my old laptop which is running OS X 10.9. APBS > tools failed to open as well. > > On Wed, Oct 22, 2014 at 6:49 PM, Xiaoguang Xue <bio...@gmail.com> wrote: > >> Hi, all the developers >> >> I installed pymol through fink in OS X 10.10, but I can't open APBS >> plugin. It seems the APBS plugin doesn't compatible with the new Tcl/Tk? >> Does anyone have idea about this? Thx! >> >> The error from pymol is >> >> Error: 1 >> <class '_tkinter.TclError'> Exception in Tk callback >> Function: <function <lambda> at 0x10bc91230> (type: <type 'function'>) >> Args: () >> Traceback (innermost last): >> File "/sw/lib/python2.7/site-packages/Pmw/Pmw_1_3_3/lib/PmwBase.py", >> line 1753, in __call__ >> return apply(self.func, args) >> File "/sw/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py", >> line 314, in <lambda> >> command = lambda s=self: APBSTools2(s)) >> File "/sw/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py", >> line 680, in __init__ >> group.pack(fill='both',expand=1, padx=4, pady=5) >> File "<string>", line 1, in pack >> None >> File "/sw/lib/python2.7/lib-tk/Tkinter.py", line 1887, in pack_configure >> + self._options(cnf, kw)) >> <class '_tkinter.TclError'>: cannot use geometry manager pack inside >> .4497116624.4497134584.4497901904.4492915920 which already has slaves >> managed by grid >> >> The OS info is >> >> Package manager version: 0.38.1 >> >> Distribution version: selfupdate-rsync Sun Oct 22 13:00:35 2014, 10.10, >> x86_64 >> >> Trees: local/main stable/main stable/crypto >> >> Xcode.app: 6.1.0 >> >> Xcode command-line tools: 6.1.0.0.1.1413057044 >> >> Max. Fink build jobs: 4 >> >> -- >> Xiaoguang Xue, PhD student >> Utrecht University >> Crystal & Structural Chemistry >> Padualaan 8. Room N807 >> 3584 CH Utrecht >> The Netherlands >> Tel. +31-30-253-2383 >> > > > > -- > Xiaoguang Xue, PhD student > Utrecht University > Crystal & Structural Chemistry > Padualaan 8. Room N807 > 3584 CH Utrecht > The Netherlands > Tel. +31-30-253-2383 > -- Xiaoguang Xue, PhD student Utrecht University Crystal & Structural Chemistry Padualaan 8. Room N807 3584 CH Utrecht The Netherlands Tel. +31-30-253-2383
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