Thanks! Problem was solved after I installed libxml2-shlibs and
libxml2-bin. I don't know why fink didn't install these two packages when I
setup pymol. But thanks so much anyway! Merry Christmas!
On Wed, Dec 17, 2014 at 10:51 PM, Alexander Hansen <
alexanderk.han...@gmail.com> wrote:
>
>
> On Dec 17, 2014, at 1:46 PM, Xiaoguang Xue <bio...@gmail.com> wrote:
>
> Dear All
>
> I got an error after I install pymol-py27 through the latest fink.
>
> My system is OS X Yosemite 10.10.1
>
> Traceback (most recent call last):
> File "/sw/lib/python2.7/site-packages/pymol/__init__.py", line 71, in
> <module>
> import pymol
> File "/sw/lib/python2.7/site-packages/pymol/__init__.py", line 533, in
> <module>
> import pymol._cmd
> ImportError: dlopen(/sw/lib/python2.7/site-packages/pymol/_cmd.so, 2):
> Library not loaded: /sw/lib/libxml2.2.dylib
> Referenced from: /sw/lib/python2.7/site-packages/pymol/_cmd.so
> Reason: Incompatible library version: _cmd.so requires version 12.0.0 or
> later, but libxml2.2.dylib provides version 10.0.0
>
> Does anyone have idea about how to fix it?
>
> Thanks!
>
> --
> Xiaoguang Xue, PhD student
> Utrecht University
> Crystal & Structural Chemistry
> Padualaan 8. Room N807
> 3584 CH Utrecht
> The Netherlands
> Tel. +31-30-253-2383
>
>
> Do you have DYLD_LIBRARY_PATH set in your environment? (“printenv
> DYLD_LIBRARY_PATH”) People often _think_ that is the right thing to do
> based on a false analogy with LD_LIBRARY_PATH in Linux, but what it does is
> completely override the default lookups. If you have that set, then what’s
> happening is pymol is trying to use a libxml2.2.dylib from something other
> than Fink based on that setting.
>
> If you don’t have DYLD_LIBRARY_PATH set, then what do you get from “otool
> -L /sw/lib/libxml2.2.dylib” ?
> --
> Alexander Hansen, Ph.D.
> Fink User Liaison
>
>
--
Xiaoguang Xue, PhD student
Utrecht University
Crystal & Structural Chemistry
Padualaan 8. Room N807
3584 CH Utrecht
The Netherlands
Tel. +31-30-253-2383
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