Hi,
many thanks for porting and supporting open source software.
I have successfully installed EMBOSS via fink and is working
beautifully from the command line, but I have troubles to run the Java
GUI interface jemboss locally; following "fink install emboss" and
according to the instructions provided at the jemboss web site, I have
modified the /sw/share/EMBOSS/jemboss/runJemboss.csh script as follows:
#!/bin/csh -f
setenv EMBOSS_INSTALL /sw/share/EMBOSS/jemboss
setenv LD_LIBRARY_PATH $EMBOSS_INSTALL/lib
setenv DYLD_LIBRARY_PATH $EMBOSS_INSTALL/lib
setenv CLASSPATH
:lib/soap.jar:lib/xerces.jar:lib/mail.jar:lib/activation.jar:lib/
jakarta-regexp-1.2.jar:lib/jalview.jar:lib/jnet.jar:lib/jcert.jar:lib/
jsse.jar:.:
java org/emboss/jemboss/Jemboss local &
When I run ./runJemboss (as admin or root, it doesn't matter), I get
the following messages:
[gvitale:EMBOSS/jemboss] % Standalone mode
/packages/emboss/STABLE/bin/wossname -colon -auto
RunEmbossApplication Error executing:
/packages/emboss/STABLE/bin/wossname -colon -auto
java.lang.NullPointerException
at
org.emboss.jemboss.programs.RunEmbossApplication.isProcessStdout(RunEmbo
ssApplication.java:71)
at
org.emboss.jemboss.gui.BuildProgramMenu$1.construct(BuildProgramMenu.jav
a:129)
at
org.emboss.jemboss.gui.SwingWorker$2.run(SwingWorker.java:127)
at java.lang.Thread.run(Thread.java:491)
I can successfully run jemboss remotely @
https://jemboss.hgmp.mrc.ac.uk:8443/axis/services with Java Web Start,
but then the whole convenience of having a local installation of EMBOSS
is gone :(
I'm I missing something?
Thanks very much in advance for help.
gaetano
--
Package manager version: 0.11.1
Distribution version: 0.5.0a.cvs
Mac OS X version: 10.2.3
December 2002 Developer Tools
gcc version: 3.1
make version: 3.79
Feedback Courtesy of FinkCommander
Gaetano Vitale, PhD
Department of Biomedical Sciences and Technologies
Immunology Section
University of Udine
Piazzale Kolbe 4
I-33100 Udine, Italy
Tel (desk): +39 0432 49 4344
Tel (lab): +39 0432 49 4342
Fax: +39 0432 494301
E-mail: [EMAIL PROTECTED]
web: http://makek.dstb.uniud.it/personal/sezioni/index.htm
-------------------------------------------------------
This SF.NET email is sponsored by: Thawte.com
Understand how to protect your customers personal information by implementing
SSL on your Apache Web Server. Click here to get our FREE Thawte Apache
Guide: http://ads.sourceforge.net/cgi-bin/redirect.pl?thaw0029en
_______________________________________________
Fink-users mailing list
[EMAIL PROTECTED]
https://lists.sourceforge.net/lists/listinfo/fink-users
