Chad: The hdf5 problem is now fixed in CVS. -Jeff
On Wed, 28 May 2003, Chad McQuinn wrote: > On 5/28/03 12:30 AM, "Michèle Garoche" <[EMAIL PROTECTED]> > wrote: > > > I've just issued a fink selfupdate-cvs, fink update-all. Fink wanted to > > update gcc3 and g77. After hours of compiling, I get the following: > > > gcc .libs/h5dumpS.o -O2 -o .libs/h5dump h5dump.o > > ../lib/.libs/libh5tools.a -L/sw/lib -L../../src/.libs -lhdf5 -lz -lm > > ld: Undefined symbols: > > _H5Tis_variable_str > > This is actually happening while compiling hdf5. The problem is the > "-L/sw/lib"; the existing installation of libhdf5 in /sw/lib will be the one > that is linked to, and not the one that is in ../../src/.libs, which comes > later in that line. But it looks like the new libhdf5 has this symbol > HSTis_variable_str that the old one does not. > > I was able to do "fink remove hdf5" (remove the old version) and then "fink > update-all"; this way the old library wasn't there to interfere. You might > be able to do that, or you might run into dependency problems trying to > remove it. In that case you are going to have to pull some kind of a hack. > It doesn't look like "/sw/lib" is specified anywhere in the file > > /sw/fink/10.2/unstable/main/finkinfo/sci/hdf5-1.4.5-1.info > > So I think the -L/sw/lib part is coming from your environment variables. > Check for this in things like LIBRARY_PATH or CFLAGS, unset those, and try > to update-all again (you don't need to modify any files; just change the > variables in the current shell). > > -Chad > -- Jeffrey S. Whitaker Phone : (303)497-6313 NOAA/OAR/CDC R/CDC1 FAX : (303)497-6449 325 Broadway Web : http://www.cdc.noaa.gov/~jsw Boulder, CO, USA 80305-3328 Office: Skaggs Research Cntr 1D-124 ------------------------------------------------------- This SF.net email is sponsored by: ObjectStore. If flattening out C++ or Java code to make your application fit in a relational database is painful, don't do it! Check out ObjectStore. Now part of Progress Software. http://www.objectstore.net/sourceforge _______________________________________________ Fink-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/fink-users
