hi,
i'm tryng to install h5utils,
i've tried a lot of time, (fink selfupdate - fink update-all - fink
install h5utils)
i'm using the resynk mode.
my machine is a PB12" osx 10.4.6
this is the complete installation-log
Last login: Fri May 19 12:16:02 on console
Welcome to Darwin!
powerbook-g4-12-di-epifanio:~ epifanio$ fink install h5utils
Password:
Information about 5221 packages read in 2 seconds.
The following package will be installed or updated:
h5utils
dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-h5utils-1.7.2-1 /
sw/src/fink.build
dpkg-deb: building package `fink-buildlock-h5utils-1.7.2-1' in `/sw/
src/fink.build/fink-buildlock-
h5utils-1.7.2-1_2006.05.19-12.51.16_darwin-powerpc.deb'.
Setting build lock...
/sw/bin/dpkg-lockwait -i /sw/src/fink.build/fink-buildlock-
h5utils-1.7.2-1_2006.05.19-12.51.16_darwin-powerpc.deb
Selecting previously deselected package fink-buildlock-h5utils-1.7.2-1.
(Reading database ... 38632 files and directories currently installed.)
Unpacking fink-buildlock-h5utils-1.7.2-1 (from .../fink-buildlock-
h5utils-1.7.2-1_2006.05.19-12.51.16_darwin-powerpc.deb) ...
Setting up fink-buildlock-h5utils-1.7.2-1 (2006.05.19-12.51.16) ...
gzip -dc /sw/src/h5utils-1.7.2.tar.gz | /sw/bin/tar -xf - --no-same-
owner --no-same-permissions
patch -p1 </sw/fink/dists/unstable/main/finkinfo/sci/h5utils.patch
patching file Makefile.in
./configure --prefix=/sw --mandir=/sw/src/fink.build/root-
h5utils-1.7.2-1/sw/share/man
checking for gcc... gcc-3.3
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-3.3 accepts -g... yes
checking whether make sets ${MAKE}... yes
checking for a BSD-compatible install... /sw/bin/ginstall -c
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc-3.3 -E
checking for ANSI C header files... yes
checking for sqrt in -lm... yes
checking for inflate in -lz... yes
checking for png_create_write_struct in -lpng... yes
checking for h4toh5... no
checking for jpeg_start_compress in -ljpeg... yes
checking for DFSDgetdata in -ldf... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking hdf.h usability... yes
checking hdf.h presence... yes
checking for hdf.h... yes
checking hdf/hdf.h usability... no
checking hdf/hdf.h presence... no
checking for hdf/hdf.h... no
checking for H5Fopen in -lhdf5... yes
checking for mkoctfile... mkoctfile
checking for octave... octave
checking where octave plugins go... /sw/lib/octave/2.1.72/site/oct/
powerpc-apple-darwin//
checking for v5dCreate in -lv5d... yes
checking vis5d/v5d.h usability... no
checking vis5d/v5d.h presence... no
checking for vis5d/v5d.h... no
checking vis5d+/v5d.h usability... yes
checking vis5d+/v5d.h presence... yes
checking for vis5d+/v5d.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking for htons... yes
checking for unsigned long... yes
checking size of unsigned long... 4
checking for float... yes
checking size of float... 4
checking for htonl... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating h5topng.1
config.status: creating config.h
make
gcc-3.3 -c -DHAVE_CONFIG_H -I/sw/include -g -O2 h5fromtxt.c -o
h5fromtxt.o
gcc-3.3 -c -DHAVE_CONFIG_H -I/sw/include -g -O2 arrayh5.c -o arrayh5.o
gcc-3.3 -c -DHAVE_CONFIG_H -I/sw/include -g -O2 h5utils.c -o h5utils.o
gcc-3.3 -g -O2 -L/sw/lib h5fromtxt.o arrayh5.o h5utils.o -lhdf5 -lz -
lm -o h5fromtxt
gcc-3.3 -c -DHAVE_CONFIG_H -I/sw/include -g -O2 h5totxt.c -o h5totxt.o
gcc-3.3 -g -O2 -L/sw/lib h5totxt.o arrayh5.o h5utils.o -lhdf5 -lz -
lm -o h5totxt
gcc-3.3 -c -DHAVE_CONFIG_H -I/sw/include -g -O2 h5tovtk.c -o h5tovtk.o
gcc-3.3 -g -O2 -L/sw/lib h5tovtk.o arrayh5.o h5utils.o -lhdf5 -lz -
lm -o h5tovtk
gcc-3.3 -c -DHAVE_CONFIG_H -I/sw/include -g -O2 h5topng.c -o h5topng.o
gcc-3.3 -c -DHAVE_CONFIG_H -I/sw/include -g -O2 writepng.c -o writepng.o
gcc-3.3 -g -O2 -L/sw/lib h5topng.o arrayh5.o h5utils.o writepng.o -
lpng -lhdf5 -lz -lm -o h5topng
mkoctfile -DHAVE_CONFIG_H -I/sw/include h5read.cc arrayh5.o h5utils.o
-L/sw/lib -lhdf5 -lz -lm
/usr/bin/ld: warning multiple definitions of symbol _xerbla_
/sw/lib/octave-2.1.72/liboctinterp.dylib(single module) definition of
_xerbla_
/sw/lib/octave-2.1.72/libcruft.dylib(single module) definition of
_xerbla_
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/
vecLib.framework/Versions/A/libBLAS.dylib(single module) definition
of _xerbla_
/usr/bin/ld: Undefined symbols:
std::basic_string<char, std::char_traits<char>, std::allocator<char>
>::_S_empty_rep_storage
std::__default_alloc_template<true, 0>::deallocate(void*, unsigned long)
std::__default_alloc_template<true, 0>::_S_force_new
std::__default_alloc_template<true, 0>::_S_free_list
std::__default_alloc_template<true, 0>::_S_node_allocator_lock
__ZNSt24__default_alloc_templateILb1ELi0EE5_LockD4Ev
std::__default_alloc_template<true, 0>::allocate(unsigned long)
std::__default_alloc_template<true, 0>::_S_refill(unsigned long)
collect2: ld returned 1 exit status
make: *** [h5read.oct] Error 1
### execution of make failed, exit code 2
Removing build lock...
/sw/bin/dpkg-lockwait -r fink-buildlock-h5utils-1.7.2-1
(Reading database ... 38633 files and directories currently installed.)
Removing fink-buildlock-h5utils-1.7.2-1 ...
Failed: phase compiling: h5utils-1.7.2-1 failed
Before reporting any errors, please run "fink selfupdate" and
try again. If you continue to have issues, please check to see if the
FAQ on fink's website solves the problem. If not, ask on the fink-users
or fink-beginners mailing lists. As a last resort, you can try e-
mailing
the maintainer directly:
Aurelien Chanudet <[EMAIL PROTECTED]>
powerbook-g4-12-di-epifanio:~ epifanio$
any help is greately appreciated !
thanks a lot!
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