Hi Alan: It looks like there are multiple problems with this package and I think I am going to throw the vile thing into the fire and start over. I can't give you my debians because they were built for /sw64 instead of /sw.
If you need apbs in a hurry for a pymol plugin, you can grab David Gohara's very fast (intel only) pre-compiled version from here: http://sourceforge.net/projects/apbs/ and redirect pymol to it. I will try to get the fink package fixed as soon as possible. Sorry for this. Bill On Aug 1, 2009, at 6:11 AM, Alan wrote: > Hi there, > Well, I found this: > > find /sw/src/fink.build | grep site > /sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/opal/ZSI/ > @INSTALL_DIR45643{prefix}/lib/python2.6/site-packages > > Apparently, at least IMHO, variable @INSTALL_DIR@ is not correctly > being > replaced in apbs.info: > sed 's|@INSTALL_DIR@|%d|g' < %{PatchFile} | patch -p1 > > In a test, I commented out in apbs.info any reference to python, > including > the patch and I got apbs deb and working. > > Dear William, would be possible to you to send me your apbs.info and > apbs.patch from sw64/ as well as your apbs deb package? > > Many thanks in advance. > > Alan > > On Fri, Jul 31, 2009 at 19:35, Alexander Hansen <alexanderk.han...@gmail.com >> wrote: > >> -----BEGIN PGP SIGNED MESSAGE----- >> Hash: SHA1 >> >> William Scott wrote: >>> >>>> There's something funny going on in the install script. For one >>>> thing, >>>> it's installing files in >>>> >>>> /sw/src/fink.build/root-apbs-1.1.0-2/sw/src/fink.build/ >>>> apbs-1.1.0-2/ >>>> >>>> I also found the ordering a bit suspect: >>>> >>>> make install DESTDIR=%d >>>> rm -Rf **/CVS # fink validate complains if this junk is left >>>> behind. >>>> # rm -Rf **/.svn # fink validate complains if this junk is left >>>> behind. >>>> mkdir -p %i/share/%n >>>> mkdir -p %i/lib >>>> >>>> I'd have assumed that we'd want to create those directories >>>> before 'make >>>> install'. >>>> - -- >>>> Alexander Hansen >>>> Fink User Liaison >>>> -----BEGIN PGP SIGNATURE----- >>>> Version: GnuPG v1.4.9 (Darwin) >>>> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ >>>> >>>> iEYEARECAAYFAkpzNMMACgkQB8UpO3rKjQ9ATgCeK9rkwdv7mt61pFn/rdc4RRwu >>>> zPEAniLUCPlwooATD+lGYN9Fd+2w6cto >>>> =V8ih >>>> -----END PGP SIGNATURE----- >>>> >>> >>> I'll be happy to change anything, but in my hands it works, and >> validates: >>> >>> % fink -v validate apbs_1.1.0-2_darwin-x86_64.deb >>> apbs-dev_1.1.0-2_darwin-x86_64.deb >>> Validating .deb file apbs_1.1.0-2_darwin-x86_64.deb... >>> Package looks good! >>> Validating .deb file >>> >>> I'm trying to find if there is a missing dependency. We have the >>> identical setup, apart from my /sw64 vs. his /sw. >>> >>> (I've emailed him back off-list). >>> >>> Bill >>> >>> >>> William G. Scott >>> >>> Contact info: >>> http://chemistry.ucsc.edu/~wgscott/ >>> >>> >> >> It doesn't work here (10.5.7/i386)--I get an identical error to Alan. >> >> - -- >> Alexander Hansen >> Fink User Liaison >> -----BEGIN PGP SIGNATURE----- >> Version: GnuPG v1.4.9 (Darwin) >> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ >> >> iEYEARECAAYFAkpzOVcACgkQB8UpO3rKjQ8DhACfbIuQE5rffn1Qn/6lAI0wc5hy >> cngAoKMDRmgsyg53OZLJ9Kwf3zvGyAhM >> =350/ >> -----END PGP SIGNATURE----- >> > > > > -- > Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate > Department of Biochemistry, University of Cambridge. > 80 Tennis Court Road, Cambridge CB2 1GA, UK. >>> http://www.bio.cam.ac.uk/~awd28<< ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
