On Sun, Dec 5, 2010 at 11:17 PM, Shaun Cutts <[email protected]> wrote:
> Hello,
>
> I'm having trouble installing scipy-py27. I'm running OSX 10.6.5, and have
> tried a "self-update". I have the 32-bit compatibility mode version of fink
> installed, but am considering switching over to full 64bit version.
>
> Below is the error message I receive. Any suggestions would be appreciated.
>
> Gratefully,
>
> -- Shaun
>
>
> -------------------------------
...
> umfpack_info:
> libraries umfpack not found in /usr/local/lib
> libraries umfpack not found in /usr/lib
> libraries umfpack not found in /opt/local/lib
> amd_info:
> libraries amd not found in /usr/local/lib
> libraries amd not found in /usr/lib
> libraries amd not found in /opt/local/lib
> FOUND:
> libraries = ['amd']
> library_dirs = ['/sw/lib']
>
> FOUND:
> libraries = ['umfpack', 'amd']
> library_dirs = ['/sw/lib']
>
> Traceback (most recent call last):
> File "setup.py", line 160, in <module>
> setup_package()
> File "setup.py", line 152, in setup_package
> configuration=configuration )
> File
> "/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/core.py",
> line 152, in setup
> config = configuration()
> File "setup.py", line 118, in configuration
> config.add_subpackage('scipy')
> File
> "/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
> line 972, in add_subpackage
> caller_level = 2)
> File
> "/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
> line 941, in get_subpackage
> caller_level = caller_level + 1)
> File
> "/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
> line 878, in _get_configuration_from_setup_py
> config = setup_module.configuration(*args)
> File "scipy/setup.py", line 20, in configuration
> config.add_subpackage('special')
> File
> "/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
> line 972, in add_subpackage
> caller_level = 2)
> File
> "/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
> line 941, in get_subpackage
> caller_level = caller_level + 1)
> File
> "/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
> line 878, in _get_configuration_from_setup_py
> config = setup_module.configuration(*args)
> File "scipy/special/setup.py", line 54, in configuration
> extra_info=get_info("npymath")
> File
> "/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
> line 2092, in get_info
> pkg_info = get_pkg_info(pkgname, dirs)
> File
> "/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/misc_util.py",
> line 2044, in get_pkg_info
> return read_config(pkgname, dirs)
> File
> "/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/npy_pkg_config.py",
> line 384, in read_config
> v = _read_config_imp(pkg_to_filename(pkgname), dirs)
> File
> "/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/npy_pkg_config.py",
> line 320, in _read_config_imp
> meta, vars, sections, reqs = _read_config(filenames)
> File
> "/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/npy_pkg_config.py",
> line 304, in _read_config
> meta, vars, sections, reqs = parse_config(f, dirs)
> File
> "/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/distutils/npy_pkg_config.py",
> line 276, in parse_config
> raise PkgNotFound("Could not find file(s) %s" % str(filenames))
> numpy.distutils.npy_pkg_config.PkgNotFound: Could not find file(s)
> ['/sw/lib/python2.7/site-packages/numpy-1.5.0b1-py2.7-macosx-10.6-i386.egg/numpy/core/lib/npy-pkg-config/npymath.ini']
> ### execution of /var/tmp/tmp.1.rPyCai failed, exit code 1
> Removing runtime build-lock...
> Removing build-lock package...
> /sw/bin/dpkg-lockwait -r fink-buildlock-scipy-py27-0.8.0-1
> (Reading database ... 201793 files and directories currently installed.)
> Removing fink-buildlock-scipy-py27-0.8.0-1 ...
> Failed: phase compiling: scipy-py27-0.8.0-1 failed
>
>
It works here. The build output corresponding to the failure looks
different for me--no references to /usr/local/lib, /opt/local/lib or
/usrllib:
...
umfpack_info:
amd_info:
FOUND:
libraries = ['amd']
library_dirs = ['/sw32/lib']
FOUND:
libraries = ['umfpack', 'amd']
library_dirs = ['/sw32/lib']
running build
...
My numpy is a newer version (1.5.0 vs. 1.5.0b1), though according to
the dependency list that shouldn't matter, and I've only got
Fink-installed Python stuff. Do you have any Macports or other
third-party python stuff in e.g. /usr/local/lib or /usr/lib that might
be interfering?
--
Alexander K. Hansen
akh AT finkproject DOT org
Fink User Liaison and Documenter
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