Hi Alexander - Thanks for the suggestions.  

> That's only true for the "fink" package manager.  (and the page you
> referenced is about a decade out of date)

I did see the 2001 date on that CVS update page, but I figured I'd try it 
anyway, just in case it helped. 

> There have been a couple of threads on the mailing lists about this
> issue, though in those cases ppl attempted to build.


I know this has been resolved for most people, and I'm feeling rather dull not 
to have been able to put the pieces together on my own.  So thanks again for 
offering your help.

> Apparently, current Macs don't have a particular update installed, and
> it doesn't appear in Software Update.  Try downloading the Java SE6
> package manually and install it.

I believe the latest Java SE 6 (update 25, according to the Oracle website) was 
installed as part of the first package I mentioned in the previous email 
(java_for_mac_os_x_10.6_update_5_dp10m3413.dmg).  If that's not the one you 
mean, could you be more specific?  I have the following:

$ java -version
java version "1.6.0_25"
Java(TM) SE Runtime Environment (build 1.6.0_25-b06-361-10M3413)
Java HotSpot(TM) 64-Bit Server VM (build 20.0-b11-361, mixed mode)


> If that doesn't work, then we'll need to see the Java-relevant portions
> from
> 
> fink-virtual-pkgs --debug

Here it is...

[snip]

Package: system-java13
Status: purge ok not-installed
Version: 1.3.1-1
description: [virtual package representing Java 1.3.1]
homepage: http://www.finkproject.org/faq/usage-general.php#virtpackage
provides: system-java

Package: system-java14
Status: purge ok not-installed
Version: 1.4.2-1
description: [virtual package representing Java 1.4.2]
homepage: http://www.finkproject.org/faq/usage-general.php#virtpackage
provides: system-java, jdbc, jdbc2, jdbc3, jdbc-optional

Package: system-java15
Status: purge ok not-installed
Version: 1.5.0-1
description: [virtual package representing Java 1.5.0]
homepage: http://www.finkproject.org/faq/usage-general.php#virtpackage
provides: system-java, jdbc, jdbc2, jdbc3, jdbc-optional

Package: system-java16
Status: purge ok not-installed
Version: 1.6.0-1
description: [virtual package representing Java 1.6.0]
homepage: http://www.finkproject.org/faq/usage-general.php#virtpackage
provides: system-java, jdbc, jdbc2, jdbc3, jdbc-optional

Package: system-java3d
Status: install ok installed
Version: 0-1
homepage: http://www.finkproject.org/faq/usage-general.php#virtpackage
description: [virtual package representing Java3D]

Package: system-javaai
Status: install ok installed
Version: 0-1
homepage: http://www.finkproject.org/faq/usage-general.php#virtpackage
description: [virtual package representing Java Advanced Imaging]

[/snip]

Thanks again for the help.

Best,
Jared

--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
550 First Ave MSB 329
New York, NY 10016
212-263-7898

On May 10, 2011, at 6:12 PM, Alexander Hansen wrote:

> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
> 
> On 5/10/11 5:39 PM, Sampson, Jared wrote:
>> Hello all -
>> 
>> I've been having troubles with "fink update-all" related to system-java-dev 
>> on a late-2009 iMac running 10.6.7 (the same problem that was reported and 
>> apparently solved back in January when Apple switched up their Java 
>> distribution).  The fix hasn't worked for me yet, so I've been holding off 
>> updating packages since then, which is no fun.
>> 
>> I've already read the related section of the FAQs 
>> <http://www.finkproject.org/faq/comp-general.php?phpLang=en#system-java> and 
>> downloaded and installed the latest 10.6 Java and Java Developer Packages, 
>> namely:
>> 
>>> java_for_mac_os_x_10.6_update_5_dp10m3413.dmg
>>> javadeveloper_10.6_10m3326.dmg
>> 
>> I've actually tried this a couple times since January with earlier Java 
>> versions as well, to no avail.  This time, yet again, the "fix" appears not 
>> to have fixed anything (everything so far was with fink 0.29.21-51).  I 
>> upgraded to 0.30.0 today and tried again...
>> 
>>> $ fink -V
>>> Package manager version: 0.30.0
>>> Distribution version: selfupdate-cvs Tue May 10 14:48:25 2011, 10.6, x86_64
>>> Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
>> 
>> ...but I still got the following error message.
>> 
>>> $ fink update-all
>>> Password:
>>> Information about 9923 packages read in 2 seconds.
>>> Can't resolve dependency "system-java-dev" for package "ppl-0.10.2-8" (no
>>> matching packages/versions found)
>>> Exiting with failure.
>> 
>> I am using CVS (because rsync always times out on my employer's network for 
>> some reason), and I've read that with CVS some things don't actually get 
>> updated automatically using "fink selfupdate," so I tried updating manually 
>> using inject.pl (as described in Updating the Package Manager at 
>> <http://www.finkproject.org/doc/cvsaccess/index.php>).  This also didn't 
>> help, so I reverted to 0.30.0-51 with "fink install fink-0.30.0-51" and 
>> performed some of the additional steps listed in the FAQ section I mentioned 
>> above to make sure I'm actually using what I think I'm using.
>> 
> 
> That's only true for the "fink" package manager.  (and the page you
> referenced is about a decade out of date)
> 
>>> $ fink dumpinfo -fallversions fink
>>> Scanning package description files..........
>>> Information about 9923 packages read in 1 seconds.
>>> allversions:
>>> b   0.29.21-51
>>> bi  0.30.0-51
>>> b   0.30.99.cvs-20110510.2045
>> 
>> I'm stumped.  Any suggestions?  
>> 
>> I apologize if there's something else that I've missed, but I've spent a 
>> couple of hours scouring the web and mailing list archives already, and 
>> figured it was time to ask the big guns for some help.
>> 
>> Many thanks,
>> Jared
>> --
>> Jared Sampson
>> Xiangpeng Kong Lab
>> NYU Langone Medical Center
>> 550 First Ave MSB 329
>> New York, NY 10016
>> 212-263-7898
>> 
>> 
> 
> There have been a couple of threads on the mailing lists about this
> issue, though in those cases ppl attempted to build.
> 
> Apparently, current Macs don't have a particular update installed, and
> it doesn't appear in Software Update.  Try downloading the Java SE6
> package manually and install it.
> 
> If that doesn't work, then we'll need to see the Java-relevant portions
> from
> 
> fink-virtual-pkgs --debug
> 
> - -- 
> Alexander Hansen, Ph.D.
> Fink User Liaison
> http://finkakh.wordpress.com/
> -----BEGIN PGP SIGNATURE-----
> Version: GnuPG v1.4.11 (Darwin)
> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
> 
> iEYEARECAAYFAk3JuDEACgkQB8UpO3rKjQ8niwCeNfNeKj92P8C703gdxECvcIeM
> jJ8AoJEeJ8wzSEh9crDy3vyet8dhti4+
> =qqM3
> -----END PGP SIGNATURE-----


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