First of all, thanks for your help.
Secondly, the error messages I have found are pasted below.
If you need I can send as well the whole log file.
Am 9/30/11 1:52 PM, schrieb Alexander Hansen:
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
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> On 9/30/11 4:55 AM, Tim Schulte wrote:
>> Dear fink users and developers, I have tried to update the CCP4
>> software package to the latest version, but got following error
>> messages. Any help is appreciated.
>>
>> *Error after downloading*
>>
>> The checksum of the file ccp4-6.2.0-core-src.tar.gz of package
>> ccp4-6.2.0-102 is incorrect. The most likely cause for this is a
>> corrupted or incomplete download Expected:
>> bfb843b62401816942cafeb94cdeb051 Actual:
>> MD5(1a087d3310d70501ac370804a11f341d)
>> SHA1(8d4f00b9d8d3f595157f78ab2214bf7ac8d6b974) It is recommended
>> that you download it again. How do you want to proceed?
>>
>> (1) Give up (2) Delete it and download again (3) Assume it
>> is a partial download and try to continue (4) Don't download,
>> use existing file
>>
>>
>>
>> *Error message when installing the package using option (4):*
>>
>> ranlib ../liblapack.a ### execution of /var/tmp/tmp.2.0TUY2S
>> failed, exit code 2 Removing runtime build-lock... Removing
>> build-lock package... /sw/bin/dpkg-lockwait -r
>> fink-buildlock-ccp4-6.2.0-102 (Reading database ... 112338 files
>> and directories currently installed.) Removing
>> fink-buildlock-ccp4-6.2.0-102 ... Reading buildlock packages...
> <snip>
>
>> Failed: phase compiling: ccp4-6.2.0-102 failed
>>
>> *System information* Package manager version: 0.31.2 Distribution
>> version: selfupdate-rsync Thu Sep 29 21:15:50 2011, 10.6, i386
>> Trees: local/main stable/main stable/crypto Xcode: 3.2.6
>>
>>
>>
> The incorrect source MD5 and your build failure are separate issues.
>
> We need to see a few lines more output before what you have posted.
> fink now builds packages using multiple threads, but one penalty for
> that is that a failure in one thread won't necessarily end the others.
> Look for an earlier error message.
Here are some errors:
...
g++ -dynamiclib -single_module ${wl}-undefined ${wl}dynamic_lookup -o
.libs/libssm.0.0.0.dylib .libs/ssm_superpose.o .libs/ss_csia.o
.libs/ss_vxedge.o .libs/ssm_align.o .libs/ss_graph.o
-L/sw/src/fink.build/ccp4-6.2.0-102/ccp4-6.2.0/lib/src -lmmdb -lccp4c
-lm -install_name /sw/lib/ccp4-6.2.0/libssm.0.dylib
-compatibility_version 1 -current_version 1.0
ld: library not found for -lmmdb
collect2: ld returned 1 exit status
make[1]: [libssm.la] Error 1 (ignored)
/bin/sh ./libtool --tag=CXX --mode=link g++ -O2
-L/sw/src/fink.build/ccp4-6.2.0-102/ccp4-6.2.0/lib/src -lmmdb -lccp4c
-L/sw/src/fink.build/ccp4-6.2.0-102/ccp4-6.2.0/lib/src -lccp4c -o
superpose superpose.o libssm.la -lm
gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -O2 -DGFORTRAN
-DPROTOTYPE -MT fni_15.lo -MD -MP -MF .deps/fni_15.Tpo -c fni_15.c
-fno-common -DPIC -o .libs/fni_15.o
libtool: link: cannot find the library `libssm.la' or unhandled argument
`libssm.la'
make[1]: [superpose] Error 1 (ignored)
gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -O2 -DGFORTRAN
-DPROTOTYPE -MT fni_15.lo -MD -MP -MF .deps/fni_15.Tpo -c fni_15.c -o
fni_15.o >/dev/null 2>&1
/bin/sh ./libtool --tag=CXX --mode=link g++ -O2
-L/sw/src/fink.build/ccp4-6.2.0-102/ccp4-6.2.0/lib/src -lmmdb -lccp4c
-L/sw/src/fink.build/ccp4-6.2.0-102/ccp4-6.2.0/lib/src -lccp4c -o
libssm.la -rpath /sw/src/fink.build/ccp4-6.2.0-102/ccp4-6.2.0/lib
ssm_superpose.lo ss_csia.lo ss_vxedge.lo ssm_align.lo ss_graph.lo -lm
gfortran -O2 -fno-second-underscore -c ztpmv.f
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I.
-I. -I. -I. -I./../fftw -I. -O2 -DGFORTRAN -DPROTOTYPE -MT fni_16.lo
-MD -MP -MF ".deps/fni_16.Tpo" -c -o fni_16.lo fni_16.c; \
then mv -f ".deps/fni_16.Tpo" ".deps/fni_16.Plo"; else rm -f
".deps/fni_16.Tpo"; exit 1; fi
g++ -dynamiclib -single_module ${wl}-undefined ${wl}dynamic_lookup -o
.libs/libssm.0.0.0.dylib .libs/ssm_superpose.o .libs/ss_csia.o
.libs/ss_vxedge.o .libs/ssm_align.o .libs/ss_graph.o
-L/sw/src/fink.build/ccp4-6.2.0-102/ccp4-6.2.0/lib/src -lmmdb -lccp4c
-lm -install_name /sw/lib/ccp4-6.2.0/libssm.0.dylib
-compatibility_version 1 -current_version 1.0
ld: library not found for -lmmdb
collect2: ld returned 1 exit status
make[1]: *** [libssm.la] Error 1
make: *** [ssm] Error 2
make: *** Waiting for unfinished jobs....
( cd src; make lapackccp4)
gfortran -O2 -fno-second-underscore -c ztrsv.f
gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -O2 -DGFORTRAN
-DPROTOTYPE -MT fni_16.lo -MD -MP -MF .deps/fni_16.Tpo -c fni_16.c
-fno-common -DPIC -o .libs/fni_16.o
...
> - --
> Alexander Hansen
> Fink User Liaison
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