Hi,
Thank you.
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
/sw/bin/gfortran --version
GNU Fortran (GCC) 4.7.2
Copyright (C) 2012 Free Software Foundation, Inc.
GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
fink dumpinfo -ePATH ccp4
PATH=/sw/var/lib/fink/path-prefix-clang:/sw/bin:/sw/sbin:/bin:/usr/bin:/sbin:/usr/sbin:/usr/X11R6/bin:/sw/share/xtal/ccp4-6.2.0/etc:/sw/share/xtal/ccp4-6.2.0/bin:/sw/share/xtal/ccp4-6.2.0/ccp4i/bin:/sw/share/xtal/ccp4-6.2.0/share/dbccp4i/bin:/sw/share/xtal/ccp4-6.2.0/share/XIAROOT/xia2/Applications:/sw/share/tinker/bin
Thanks,
Shih-Kai Chou
On Thu, Jan 10, 2013 at 10:34 AM, Alexander Hansen <
alexanderk.han...@gmail.com> wrote:
> Normally fink's gfortran shouldn't get overwritten (unless you switch
> versions within Fink), but let's verify that with the following command:
>
> /sw/bin/gfortran --version
>
> Also, let's verify the PATH which is being used in your build:
>
> fink dumpinfo -ePATH ccp4
>
> On 1/9/13 7:18 PM, Shih-Kai Chou wrote:
> > Hi,
> >
> > which gfortran
> >
> > /sw/bin/gfortran
> >
> >
> > Actually, I have installed another fortran compiler!
> > (I think that is the newest fortran compiler called gfortran, so I do
> it.)
> >
> > But I forgot which directory is the one I installed?
> >
> > It looks like the new gfortran I installed replaced the fink one!
> >
> >
> >
> > Thanks,
> >
> > Shih-Kai Chou
> >
>
> >
> >
> >
> >
> >
> > On Thu, Jan 10, 2013 at 7:38 AM, Alexander Hansen
> > <alexanderk.han...@gmail.com <mailto:alexanderk.han...@gmail.com>>
> wrote:
> >
> > On 1/9/13 9:41 AM, Shih-Kai Chou wrote:
> > > Hi,
> > >
> > > I use :
> > >
> > > fink selfupdate
> > > fink update-all
> > >
> > >
> > > for ccp4 :
> > >
> > > ..........
> > >
> > > wall clock time: 4 minutes 9.43 seconds (249.43 seconds total)
> > > cd exe
> > > cp phaser $CCP4/bin/.
> > >
> > > cd $CCP4
> > >
> > > # rapper manual install
> > > if [[ -x src/rapper/bin/rapper ]]; then
> > > cp src/rapper/bin/rapper $CCP4/bin/.
> > > cp src/rapper/lib/libcord.1.0.3.dylib
> > $CCP4/lib/libcord.1.dylib
> > > cp src/rapper/lib/libgc.1.0.3.dylib
> > $CCP4/lib/libgc.1.dylib
> > > cp src/rapper/lib/libxml2.2.dylib
> > $CCP4/lib/libxml2.2.dylib
> > > /bin/rm -rf src/rapper/lib/*.dylib
> > > mkdir -p share/rapper
> > > cp src/rapper/LOOP/params.xml share/rapper/.
> > > cp -R src/rapper/data share/rapper/.
> > > fi
> > >
> > >
> > > * export DYLD_LIBRARY_PATH=$CLIB*
> > > * cd $CLIB/libccp4*
> > > * gfortran -m64 -fno-second-underscore -O2
> -fno-second-underscore
> > > -L$CLIB -o data/fontpack data/fontpack.o -lccp4f -lccp4c*
> > > * cd data*
> > > * ./fontpack*
> > > *At line 12 of file data/fontpack.f (unit = 10, file = 'fort.10')*
> > > *Fortran runtime error: End of file*
> > >
> > > Backtrace for this error:
> > > + 0 libgfortran.3.dylib 0x00000001029d1e93
> > > _gfortrani_show_backtrace + 35
> >
> > <snip>
> >
> > > ..........
> > >
> > >
> > > Package manager version: 0.34.4
> > > Distribution version: selfupdate-rsync Wed Jan 9 23:24:23 2013,
> 10.6,
> > > x86_64
> > > Trees: local/main stable/main stable/crypto unstable/main
> > unstable/crypto
> > > Xcode.app: 3.2.6
> > > Xcode command-line tools: 3.2.6
> > > ccp4-6.3.0-5 is set to build with only one job.
> > >
> > >
> > >
> > > Thanks,
> > >
> > > Shih-Kai Chou
> > >
> > >
> >
> > What do you get from the following command:
> >
> > which gfortran
> >
> > --
> > Alexander Hansen, Ph.D.
> > Fink User Liaison
> > My package updates: http://finkakh.wordpress.com/
> >
> >
> >
> >
>
>
>
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