On 10/6/13 11:54 PM, Morris, Kyle wrote: > Hi, > > I am unable to install PDB2PQR using Fink 0.35.2 on OS 10.8. It appears to > fails after the terminal echoes 'Configuration Parameters'. The same error > occurs if I run 'fink update PDB2PQR' and remains after running 'fink > selfpdate' and 'fink update-all'. I have appended what I think are the > relevant parts. Could you make any suggestions as to how to solve this? > > Thanks for your help. > > Best wishes, > Kyle > > ======================== > Configuration Parameters > ======================== > > User ID: fink-bld > Version: 1.7 > Install Dir: /tmp/fink-build-HOME.tLSVzzOXrC/pdb2pqr/ > propka: enable > pdb2pka: enable > PY_CFLAGS: -I/sw/include/python2.7 > -I/tmp/fink-build-HOME.tLSVzzOXrC/pdb2pqr/numpy/lib/python2.7/site-packages/numpy/core/include/numpy >
<snip> > g++ -DPACKAGE_NAME=\"PDB2PQR\" -DPACKAGE_TARNAME=\"pdb2pqr\" > -DPACKAGE_VERSION=\"1.7\" -DPACKAGE_STRING=\"PDB2PQR\ 1.7\" > -DPACKAGE_BUGREPORT=\"[email protected]\" -DPACKAGE=\"PDB2PQR\" > -DVERSION=\"1.7\" -I. -I/sw/include/python2.7 > -I/tmp/fink-build-HOME.tLSVzzOXrC/pdb2pqr/numpy/lib/python2.7/site-packages/numpy/core/include/numpy > -g -O2 -c -o Algorithms.o Algorithms.cpp > Algorithms.cpp:43:10: fatal error: 'arrayobject.h' file not found > #include "arrayobject.h" > ^ The build works here (also 10.8/Xcode 5), but I noticed that that the PY_CFLAGS parameter is different for me: PY_CFLAGS: -I/sw/include/python2.7 -I/sw/lib/python2.7/site-packages/numpy/core/include/numpy It seems to me like there's a missing dependency on numpy-py27. -- Alexander Hansen, Ph.D. Fink User Liaison My package updates: http://finkakh.wordpress.com/ ------------------------------------------------------------------------------ October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60134791&iu=/4140/ostg.clktrk _______________________________________________ Fink-users mailing list [email protected] List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
