On 11/11/13 12:48 PM, William Scott wrote: > Hi Jeremy: > > I’ve seen that error when a gfortran other than fink (eg, > /usr/local/bin/gfortran ) is mixed in. > > This version of ccp4 is now out of date, and CCP4 has asked that we instead > direct people to their v. 6.4.02 binaries > which are now 64-bit and include an automatic updating system. > > http://www.ccp4.ac.uk/download/index.php#os=mac > > — Bill > > William G. Scott > > Contact info: > http://chemistry.ucsc.edu/~wgscott/ > > > On Nov 11, 2013, at 9:34 AM, Jeremy Murray <jeremy.mur...@me.com> wrote: > >> Has anyone experienced the below error trying to installing CCP4 on 10.8.3? >> >> ++++++++++ >> wall clock time: 5 minutes 35.97 seconds (335.97 seconds total) >> cd exe >> cp phaser $CCP4/bin/. >> >> cd $CCP4 >> >> # rapper manual install >> if [[ -x src/rapper/bin/rapper ]]; then >> cp src/rapper/bin/rapper $CCP4/bin/. >> cp src/rapper/lib/libcord.1.0.3.dylib $CCP4/lib/libcord.1.dylib >> cp src/rapper/lib/libgc.1.0.3.dylib $CCP4/lib/libgc.1.dylib >> cp src/rapper/lib/libxml2.2.dylib $CCP4/lib/libxml2.2.dylib >> /bin/rm -rf src/rapper/lib/*.dylib >> mkdir -p share/rapper >> cp src/rapper/LOOP/params.xml share/rapper/. >> cp -R src/rapper/data share/rapper/. >> fi >> >> >> export DYLD_LIBRARY_PATH=$CLIB >> cd $CLIB/libccp4 >> gfortran -m64 -fno-second-underscore -O2 -fno-second-underscore >> -L$CLIB -o data/fontpack data/fontpack.o -lccp4f -lccp4c >> cd data >> ./fontpack >> At line 12 of file data/fontpack.f (unit = 10, file = 'fort.10') >> Fortran runtime error: End of file >> ### execution of /tmp/fink.Jv5ko failed, exit code 2 >> ### execution of /tmp/fink.S1EWB failed, exit code 2 >> Removing runtime build-lock... >> Removing build-lock package... >> /sw/bin/dpkg-lockwait -r fink-buildlock-ccp4-6.3.0-6 >> (Reading database ... 113190 files and directories currently installed.) >> Removing fink-buildlock-ccp4-6.3.0-6 ... >> Reading buildlock packages... >> /sw/bin/dpkg-lockwait -i >> /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/ssm-dev_1.3-101_darwin-x86_64.deb >> >> /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/mmdb-dev_1.25.3-101_darwin-x86_64.deb >> >> /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/clipper_2.1.20130601-101_darwin-x86_64.deb >> >> /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/clipper-dev_2.1.20130601-101_darwin-x86_64.deb >> Selecting previously deselected package ssm-dev. >> (Reading database ... 113189 files and directories currently installed.) >> Unpacking ssm-dev (from .../ssm-dev_1.3-101_darwin-x86_64.deb) ... >> Selecting previously deselected package mmdb-dev. >> Unpacking mmdb-dev (from .../mmdb-dev_1.25.3-101_darwin-x86_64.deb) ... >> Selecting previously deselected package clipper. >> Unpacking clipper (from .../clipper_2.1.20130601-101_darwin-x86_64.deb) ... >> Selecting previously deselected package clipper-dev. >> Unpacking clipper-dev (from >> .../clipper-dev_2.1.20130601-101_darwin-x86_64.deb) ... >> Setting up ssm-dev (1.3-101) ... >> Clearing dependency_libs of .la files being installed >> >> Setting up mmdb-dev (1.25.3-101) ... >> Clearing dependency_libs of .la files being installed >> >> Setting up clipper (2.1.20130601-101) ... >> >> Setting up clipper-dev (2.1.20130601-101) ... >> Clearing dependency_libs of .la files being installed >> >> Failed: phase installing: ccp4-6.3.0-6 failed >> >> >> Also include the following system information: >> Package manager version: 0.36.0 >> Distribution version: selfupdate-cvs Mon Nov 11 07:15:33 2013, 10.8, x86_64 >> Trees: local/main stable/main >> Xcode.app: 4.6.3 >> Xcode command-line tools: 4.6.0.0.1.1365549073 >> ccp4-6.3.0-6 is set to build with only one job. > > > >=
From a maintenance standpoint, since upstream has basically said "don't package us any more", it might be good to provide a dummy transition package in Fink for which doesn't install much other than a README file with what you said above, and displays the contents of that file during the install process as well. Or you could just pull the package altogether. :-) The downside to that being that people who _do_ currently have it installed via Fink won't get the update notice. -- Alexander Hansen, Ph.D. Fink User Liaison My package updates: http://finkakh.wordpress.com/ ------------------------------------------------------------------------------ November Webinars for C, C++, Fortran Developers Accelerate application performance with scalable programming models. Explore techniques for threading, error checking, porting, and tuning. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60136231&iu=/4140/ostg.clktrk _______________________________________________ Fink-users mailing list Fink-users@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
