Problem solved! I updated netcdf-c7 and netcdf-c7-shlibs to the most recent version and gmt5 compiled with no problems. Thanks for your help.
Max On Fri, Apr 4, 2014 at 4:27 PM, Alexander Hansen < alexanderk.han...@gmail.com> wrote: > On 4/4/14, 3:27 PM, Max Rudolph wrote: > >> Hi Remko and Kurt, >> Thanks for your help! I tried updating to the latest XCode and command >> line tools and the problem persists. I am using OS X 10.9.2. I have >> gshhg installed and also ran 'fink reinstall gshhg' as suggested. It >> looks like there is still a cmake error related to finding gshhg. Should >> it be a problem to have gmt 4.5 installed as well? When I first looked >> at the error logs, I thought that this problem was related to omp.h. >> Apple's clang apparently does not support OpenMP. I do have gcc48 >> installed through fink, but it looks like fink is trying to build gmt5 >> using clang. >> >> bash-3.2$ fink list -i llvm gcc >> Information about 8420 packages read in 7 seconds. >> i gcc48 4.8.2-1001 GNU Compiler Collection Version >> 4.8 >> i gcc48-compiler 4.8.2-1001 Compiler Binaries for gcc48 >> i gcc48-shlibs 4.8.2-1001 Shared libraries for gcc4 >> i llvm-gcc42 2336.11-7 Apple gcc compiler frontend for >> llvm >> i llvm-gcc42-shlibs 2336.11-7 Shared libraries for llvm-gcc42 >> bash-3.2$ >> >> The first error reported is: >> >> -- ANSI C header files - found >> CMake Error at cmake/modules/FindGSHHG.cmake:68 (string): >> string sub-command STRIP requires two arguments. >> Call Stack (most recent call first): >> src/CMakeLists.txt:117 (find_package) >> >> The GSHHG error is: >> -- Could NOT find GSHHG (missing: GSHHG_VERSION GSHHG_EXT) >> -- Found DCW: /sw/share/gmt/dcw >> -- Using CFLAGS = '-fstrict-aliasing -O3 -DNDEBUG' >> -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE) >> >> Best, >> Max >> >> > We don't want our packages to use random compilers, so they only build > with gcc48 if explicitly told to. > > I don't reproduce your error on 10.9/Xcode 5.1 > > > -- Looking for 4 include files stdlib.h, ..., float.h - found > -- Performing Test memchrExists > -- Performing Test memchrExists - Success > -- Performing Test freeExists > -- Performing Test freeExists - Success > -- ANSI C header files - found > -- Found GSHHG: /sw/share/gmt/gshhg > > Ideally, it shouldn't be a problem to have gmt-4.5, too. > > What version of netcdf-c7-shlibs do you have installed (e.g. via > 'apt-cache policy netcdf-c7-shlibs')? Somebody sent me a .nc file a while > go which he claimed didn't work with whatever version he had, but which > worked for me using the current 4.3.1.1-1 version. > > > > -- > Alexander Hansen, Ph.D. > Fink User Liaison > My package updates: http://finkakh.wordpress.com/ >
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