On 4/10/14, 8:37 AM, Wollenberg, Kurt (NIH/NIAID) [C] wrote: > Hello everybody: > > I've been trying to use fink to install bioperl on my desktop machine (Mac > quad-core running OS 10.8.5) using "sudo fink install bioperl-pm5124" and get > the following error and resulting behavior: > > gcc -DHAVE_CONFIG_H -I. -I/sw/include -Werror -no-cpp-precomp -g -O2 -g > -Wall -MT usb.lo -MD -MP -MF .deps/usb.Tpo -c usb.c -DPIC > error: unknown warning option > '-Werror=unused-command-line-argument-hard-error-in-future'; did you mean > '-Werror=unused-command-line-argument'? [-Werror,-Wunknown-warning-option] > make[2]: *** [usb.lo] Error 1 > make[1]: *** [all-recursive] Error 1 > make: *** [all] Error 2 > ### execution of /tmp/fink.M6Uxt failed, exit code 2 > ### execution of /tmp/fink.6F99e failed, exit code 2 > > Here's my system information: > Also include the following system information: > Package manager version: 0.36.4 > Distribution version: selfupdate-rsync Thu Apr 10 11:21:44 2014, 10.8, x86_64 > Trees: local/main stable/main > Xcode.app: 5.0 > Xcode command-line tools: 5.0.1.0.1.1377666378 > Max. Fink build jobs: 1 > > I've run "fink self update" and reconfigured fink to to have max build jobs = > 1 and I'm still getting this same error. > > Help? > > Cheers, > Kurt Wollenberg, Ph.D. > Contractor - MSC, Inc. > Phylogenetics Specialist > Computational Biology Section > Bioinformatics and Computational Biosciences Branch (BCBB) > OCICB/OSMO/OD/NIAID/NIH > > 31 Center Drive, Room 3B62 > Bethesda, MD 20892-0485 > Office 301-402-8628 > http://bioinformatics.niaid.nih.gov<http://bioinformatics.niaid.nih.gov/> > (Within NIH) > http://exon.niaid.nih.gov<http://exon.niaid.nih.gov/> (Public) > > Disclaimer: > The information in this e-mail and any of its attachments is confidential > and may contain sensitive information. It should not be used by anyone who > is not the original intended recipient. If you have received this e-mail in > error please inform the sender and delete it from your mailbox or any other > storage devices. National Institute of Allergy and Infectious Diseases shall > not accept liability for any statements made that are sender's own and not > expressly made on behalf of the NIAID by one of its representatives >
The flag which is causing your error comes from Fink's compiler wrappers. They're supposed to be checking whether clang supports that flag or not. I had thought that your version of clang wouldn't trigger that flag to be set, though I didn't have the Xcode 5.0 CL tools handy for verification. What do you get from clang -Wno-error=unused-command-line-argument-hard-error-in-future 2>&1 | grep unknown ? As a workaround while a proper fix is developed, edit /sw/var/lib/fink/path-prefix-clang/compiler_wrapper as an administrator and change the bottom uncommented line to exec $compiler "$@" -- Alexander Hansen, Ph.D. Fink User Liaison My package updates: http://finkakh.wordpress.com/ ------------------------------------------------------------------------------ Put Bad Developers to Shame Dominate Development with Jenkins Continuous Integration Continuously Automate Build, Test & Deployment Start a new project now. Try Jenkins in the cloud. http://p.sf.net/sfu/13600_Cloudbees _______________________________________________ Fink-users mailing list Fink-users@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
