On 5/29/14, 12:48 PM, Paulo Canessa wrote:
> thanks for the reply,
>
> I am attaching a txt file with the lanes that came out after "fink install
> tophat2" at the terminal.
> I am not a computer expert, but......lane 1540?????
>
> Thanks,
> Paulo
>
(We prefer inline text to attachments, since it makes the list archives
easier to search, and because it avoids the labor of having to copy and
paste text back into the message for context. To save length, it is
rarely necessary to include text from the builds of packages other than
the one that is failing, and there's no need to include the output from
unpacking the source. We definitely also don't need to see the results
from multiple attempts to build a package unless something is actually
different between them)
What Hanspeter specifically asked for starts here:
Looking for incorrect headers in 35 dependency files...
./src/.deps/align_status.Po uses /opt/local/include/zconf.h
./src/.deps/align_status.Po uses /opt/local/include/zlib.h
Please fix build process to get consistent use of fink's headers.
You have Macports installed and the tophat2 build operation is mixing
elements from that and Fink. It's generally a good idea to make
Macports inactive when building with Fink, and vice versa.
--
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/
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