I've tried a number of times the following combination:
fink selfupdate
fink update-all
but each time it ends as shown in the log below. Could someone please
diagnose what is wrong, and tell me how to fix it?
Thanks in advance,
Lowell Tacconi-Garman
[vpn-44-230:~] ltacconi% fink update-all
Information about 10647 packages read in 4 seconds.
The following 14 packages will be installed or updated:
graphviz graphviz-shlibs imagemagick2-shlibs imagemagick5-shlibs
libavcodec52-shlibs libavformat52-shlibs libavutil50-shlibs
libdjvulibre21-dev
libdjvulibre21-shlibs libgegl0.1.0-dev libgegl0.1.0-shlibs
libopenraw1-dev libopenraw1-shlibs libxml2-py27
The following 10 additional packages will be installed:
boost1.55-nopython boost1.55-nopython-shlibs hwloc hwloc-dev
hwloc-shlibs libpng14 librsvg2-bin llvm33 openmpi openmpi-shlibs
The following package might be temporarily removed:
tcltk-dev
Do you want to continue? [Y/n] Y
Temporarily removing BuildConflicts:
tcltk-dev
Reading buildlock packages...
/sw/bin/dpkg-lockwait --remove tcltk-dev
(Reading database ... 106680 files and directories currently installed.)
Removing tcltk-dev ...
Setting runtime build-lock...
dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-graphviz-2.26.3-8
/sw/src/fink.build
dpkg-deb: building package `fink-buildlock-graphviz-2.26.3-8' in
`/sw/src/fink.build/fink-buildlock-graphviz-2.26.3-8_2014.06.18-13.26.56_darwin-x86_64.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i
/sw/src/fink.build/fink-buildlock-graphviz-2.26.3-8_2014.06.18-13.26.56_darwin-x86_64.deb
Selecting previously deselected package fink-buildlock-graphviz-2.26.3-8.
(Reading database ... 105538 files and directories currently installed.)
Unpacking fink-buildlock-graphviz-2.26.3-8 (from
.../fink-buildlock-graphviz-2.26.3-8_2014.06.18-13.26.56_darwin-x86_64.deb)
...
Setting up fink-buildlock-graphviz-2.26.3-8 (2014.06.18-13.26.56) ...
sudo -u fink-bld [ENV] sh -c /tmp/fink.MdcUh
env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions
-xf /sw/src/graphviz-2.26.3.tar.gz
sudo -u fink-bld [ENV] sh -c /tmp/fink.Ftwdb
[ -r /sw/fink/dists/stable/main/finkinfo/graphics/graphviz.patch ]
sudo -u fink-bld [ENV] sh -c /tmp/fink.qqQ3r
/tmp/fink.2SucW
#!/bin/sh -ev
sed 's|@FINKPREFIX@|/sw|g' <
/sw/fink/dists/stable/main/finkinfo/graphics/graphviz.patch | patch -p1
patching file configure
patching file plugin/quartz/gvplugin_quartz.h
patching file plugin/quartz/gvplugin_quartz.c
patching file plugin/quartz/gvloadimage_quartz.c
patching file plugin/quartz/gvrender_quartz.c
patching file lib/gvc/gvcext.h
patching file tclpkg/gv/Makefile.am
Hunk #1 succeeded at 100 (offset -11 lines).
patching file tclpkg/gv/Makefile.in
Hunk #1 succeeded at 2825 (offset -537 lines).
patching file configure
Hunk #1 succeeded at 27582 with fuzz 2 (offset 5657 lines).
sed -i.orig -e '/OCAML/s|/usr|/sw|g' \
-e '/framework/s|-\(framework\) |-Wl,-\1,|g' \
configure
# don't bother with Makefile.am
for f in `grep -lr -e "-framework " macosx plugin | grep -v \.am` ; do
sed -i.orig -e '/framework/s|-\(framework\) |-Wl,-\1,|g' $f
done
grep -lr -e "-framework " macosx plugin | grep -v \.am
sed -i.orig -e '/am__append_5/s|LIBLTDL|LTDLDEPS|' lib/gvc/Makefile.in
sudo -u fink-bld [ENV] sh -c /tmp/fink.KM2nu
/tmp/fink.Mz37k
#!/bin/sh -ev
ruby_h_path=`find /usr/lib/ruby -name ruby.h | head -n 1`
find /usr/lib/ruby -name ruby.h | head -n 1
test -f "$ruby_h_path" || ruby_h_path=`find /System/Library/Frameworks
-name ruby.h | head -n 1`
find /System/Library/Frameworks -name ruby.h | head -n 1
test -f "$ruby_h_path" && echo "Found ruby.h as $ruby_h_path, using its
dirname..."
Found ruby.h as
/System/Library/Frameworks/Ruby.framework/Versions/1.8/Headers/ruby.h,
using its dirname...
system_ruby_include=`dirname $ruby_h_path`
dirname $ruby_h_path
test -d "$system_ruby_include"
if test -d "/usr/X11R6"
then X11_ROOT=/usr/X11R6
elif test -d "/opt/X11"
then X11_ROOT=/opt/X11
elif test "." = "."
then { echo "No X11 found."; exit 1; }
# else, don't care if X11 is not found for -nox
fi
# handle java
JAVA_VERSION=`javac -version 2>&1 >/dev/null | cut -d ' ' -f 2`
javac -version 2>&1 >/dev/null | cut -d ' ' -f 2
JAVA_RELEASE=`javac -version 2>&1 >/dev/null | cut -d ' ' -f 2 | cut
-d. -f1-2`
javac -version 2>&1 >/dev/null | cut -d ' ' -f 2 | cut -d. -f1-2
case "$JAVA_RELEASE" in
"1.6") export LDFLAGS="-Wl,-framework,JavaVM
-Wl,-framework,ApplicationServices -Wl,-framework,CoreServices"
./configure --prefix=/sw --mandir=/sw/share/man \
--disable-static \
--with-included-ltdl=no \
--with-ltdl-include=/sw/include \
--with-ltdl-lib=/sw/lib \
--with-extraincludedir=/sw/include \
--with-extralibdir=/sw/lib \
--with-tcl=/usr/bin/tclsh \
--with-tclsh=/usr/bin/tclsh \
--with-wish=/usr/bin/wish \
--without-lasi \
--without-ghostscript \
--without-devil \
--with-ming \
--with-quartz \
LUA=lua51 \
--with-x \
--with-rsvg \
--x-includes=$X11_ROOT/include \
--x-libraries=$X11_ROOT/lib \
--with-glitz \
--with-libgd \
--with-gts \
--with-glutincludedir="/sw/include -I$X11_ROOT/include" \
--with-glutlibdir=/sw/lib \
\
\
\
\
\
\
\
\
\
\
\
--disable-r \
--disable-perl \
--disable-python \
GUILE=/sw/bin/guile-1.8 \
PKG_CONFIG_PATH="/sw/lib/fontconfig2/lib/pkgconfig:$PKG_CONFIG_PATH" \
RUBY=/usr/bin/ruby
CPPFLAGS="-I/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Headers
-I/System/Library/Frameworks/JavaVM.framework/Versions/A/Headers
-I/sw/lib/ocaml -idirafter $system_ruby_include" -C
;;
"1.7" ) export
LDFLAGS="-L/Library/Java/JavaVirtualMachines/jdk$JAVA_VERSION.jdk/Contents/Home/lib
-Wl,-framework,ApplicationServices -Wl,-framework,CoreServices"
./configure --prefix=/sw --mandir=/sw/share/man \
--disable-static \
--with-included-ltdl=no \
--with-ltdl-include=/sw/include \
--with-ltdl-lib=/sw/lib \
--with-extraincludedir=/sw/include \
--with-extralibdir=/sw/lib \
--with-tcl=/usr/bin/tclsh \
--with-tclsh=/usr/bin/tclsh \
--with-wish=/usr/bin/wish \
--without-lasi \
--without-ghostscript \
--without-devil \
--with-ming \
--with-quartz \
LUA=lua51 \
--with-x \
--with-rsvg \
--x-includes=$X11_ROOT/include \
--x-libraries=$X11_ROOT/lib \
--with-glitz \
--with-libgd \
--with-gts \
--with-glutincludedir="/sw/include -I$X11_ROOT/include" \
--with-glutlibdir=/sw/lib \
\
\
\
\
\
\
\
\
\
\
\
--disable-r \
--disable-perl \
--disable-python \
GUILE=/sw/bin/guile-1.8 \
PKG_CONFIG_PATH="/sw/lib/fontconfig2/lib/pkgconfig:$PKG_CONFIG_PATH" \
RUBY=/usr/bin/ruby
CPPFLAGS="-I/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Headers
-I/Library/Java/JavaVirtualMachines/jdk$JAVA_VERSION.jdk/Contents/Home/include
-I/sw/lib/ocaml -idirafter $system_ruby_include" -C
;;
*) ;;
esac
# TK_XINCLUDES needed for 10.8
sed -i.orig -e '/framework/s|-\(framework\) |-Wl,-\1,|g' \
-e "/TK_XINCLUDES/s|\"\"|\"-I$X11_ROOT/include\"|" config.status
sed: config.status: No such file or directory
### execution of /tmp/fink.Mz37k failed, exit code 1
### execution of /tmp/fink.KM2nu failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-graphviz-2.26.3-8
(Reading database ... 105539 files and directories currently installed.)
Removing fink-buildlock-graphviz-2.26.3-8 ...
Reading buildlock packages...
/sw/bin/dpkg-lockwait -i
/sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-dev_8.5.15-4_darwin-x86_64.deb
Selecting previously deselected package tcltk-dev.
(Reading database ... 105538 files and directories currently installed.)
Unpacking tcltk-dev (from .../tcltk-dev_8.5.15-4_darwin-x86_64.deb) ...
Setting up tcltk-dev (8.5.15-4) ...
Failed: phase compiling: graphviz-2.26.3-8 failed
Before reporting any errors, please run "fink selfupdate" and try again.
If you continue to have issues, please check to see if the FAQ on Fink's
website solves the problem. If not, ask on one (not both, please) of
these mailing lists:
The Fink Users List <fink-users@lists.sourceforge.net>
The Fink Beginners List <fink-beginn...@lists.sourceforge.net>,
with a carbon copy to the maintainer:
David Fang <fang...@users.sourceforge.net>
Note that this is preferable to emailing just the maintainer directly,
since most fink package maintainers do not have access to all possible
hardware and software configurations.
Please try to include the complete error message in your report. This
generally consists of a compiler line starting with e.g. "gcc" or "g++"
followed by the actual error output from the compiler.
Also include the following system information:
Package manager version: 0.37.0
Distribution version: selfupdate-rsync Wed Jun 18 13:24:19 2014, 10.7,
x86_64
Trees: local/main stable/main unstable/main unstable/crypto
Xcode.app: 4.6.3
Xcode command-line tools: 4.6.0.0.1.1365549073
Max. Fink build jobs: 1
------------------------------------------------------------------------------
HPCC Systems Open Source Big Data Platform from LexisNexis Risk Solutions
Find What Matters Most in Your Big Data with HPCC Systems
Open Source. Fast. Scalable. Simple. Ideal for Dirty Data.
Leverages Graph Analysis for Fast Processing & Easy Data Exploration
http://p.sf.net/sfu/hpccsystems
_______________________________________________
Fink-users mailing list
Fink-users@lists.sourceforge.net
List archive:
http://news.gmane.org/gmane.os.macosx.fink.user
Subscription management:
https://lists.sourceforge.net/lists/listinfo/fink-users
