On 10/23/14, 8:25 AM, Petri Piila wrote:
> Dear octave maintainer,
>
> octave-atlas-3.8.2-1 fails in configuration stage. All dependencies compile
> successfully.
>
> My system:
>
> Package manager version: 0.38.1
> Distribution version: selfupdate-cvs Thu Oct 23 17:32:35 2014, 10.10, x86_64
> Trees: local/main stable/main stable/crypto
> Xcode.app: 6.1
> Xcode command-line tools: 6.1.0.0.1.1413057044
> Max. Fink build jobs: 1
>
>
> Log:
>
> % fink install octave-atlas
> Information about 10045 packages read in 1 seconds.
> The following package will be installed or updated:
> octave-atlas
> The following additional package will be installed:
> octave382-atlas
> Default answer will be chosen in 60 seconds...
> Do you want to continue? [Y/n]
> Setting runtime build-lock...
> dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-octave-atlas-3.8.2-1
> /sw/src/fink.build
> dpkg-deb: building package `fink-buildlock-octave-atlas-3.8.2-1' in
> `/sw/src/fink.build/fink-buildlock-octave-atlas-3.8.2-1_2014.10.23-17.33.03_darwin-x86_64.deb'.
> Installing build-lock package...
> /sw/bin/dpkg-lockwait -i
> /sw/src/fink.build/fink-buildlock-octave-atlas-3.8.2-1_2014.10.23-17.33.03_darwin-x86_64.deb
> Selecting previously deselected package fink-buildlock-octave-atlas-3.8.2-1.
> (Reading database ... 146669 files and directories currently installed.)
> Unpacking fink-buildlock-octave-atlas-3.8.2-1 (from
> .../fink-buildlock-octave-atlas-3.8.2-1_2014.10.23-17.33.03_darwin-x86_64.deb)
> ...
> Setting up fink-buildlock-octave-atlas-3.8.2-1 (2014.10.23-17.33.03) ...
>
> sudo -u fink-bld [ENV] sh -c /tmp/fink.KKfbp
> env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xf
> /sw/src/octave-3.8.2.tar.bz2
> sudo -u fink-bld [ENV] sh -c /tmp/fink.Znqjq
> [ -r /sw/fink/dists/stable/main/finkinfo/sci/octave-3.8.2-octaverc.patch ]
> sudo -u fink-bld [ENV] sh -c /tmp/fink.fJqzi
> [ -r /sw/fink/dists/stable/main/finkinfo/sci/octave-3.8-manpages.patch ]
> sudo -u fink-bld [ENV] sh -c /tmp/fink._TLcJ
> [ -r /sw/fink/dists/stable/main/finkinfo/sci/octave-3.8.2-clang-libcxx.patch ]
> sudo -u fink-bld [ENV] sh -c /tmp/fink.xrLZr
> /tmp/fink.sYNLo
> #!/bin/sh -ev
>
> # create versioned manpages
> cp doc/interpreter/octave.1 doc/interpreter/octave-3.8.2.1
> cp doc/interpreter/octave-config.1 doc/interpreter/octave-config-3.8.2.1
> cp doc/interpreter/octave-cli.1 doc/interpreter/octave-cli-3.8.2.1
> cp doc/interpreter/mkoctfile.1 doc/interpreter/mkoctfile-3.8.2.1
> # fix executable names in versioned manpages
> sed -e 's/@OCTVERSION@/3.8.2/g'
> /sw/fink/dists/stable/main/finkinfo/sci/octave-3.8-manpages.patch | patch -p1
> patching file doc/interpreter/mkoctfile-3.8.2.1
> patching file doc/interpreter/octave-3.8.2.1
> patching file doc/interpreter/octave-cli-3.8.2.1
> patching file doc/interpreter/octave-config-3.8.2.1
>
> #Fink-specific structural changes
> sed -e 's/@OCTVERSION@/3.8.2/g' -e 's|@FINKPREFIX@|/sw|g'
> /sw/fink/dists/stable/main/finkinfo/sci/octave-3.8.2-octaverc.patch | patch
> -p1
> patching file octaverc
> # Put in the Fink tree.
> sed -i -e 's|@FINKPREFIX@|/sw|g' doc/interpreter/*.1 src/mkoctfile*in.cc
>
> # instead of using flag-sort, ensure that the right sysdep.h is used
> grep -lr '#include "sysdep.h"' * | xargs perl -pi.orig -e
> 's,sysdep.h,/sw/src/fink.build/octave-atlas-3.8.2-1/octave-3.8.2/libinterp/corefcn/sysdep.h,'
>
> # If we're not using an X11-based FLTK, just because we _have_ X
> doesn't mean
> # we want to use it.
> if [ "." != "-x11" ] ; then
> perl -pi -e 's/HAVE_X_WINDOWS/HAVE_X_BINDOWS/g'
> libinterp/dldfcn/__init_fltk__.cc
> fi
>
> # fix build using clang-6
> clangvers=`clang --version | head -n 1 | cut -d\ -f 4`
> clang --version | head -n 1 | cut -d\ -f 4
> if [ "$clangvers" > "5.9.9" ] ; then
> patch -p1 <
> /sw/fink/dists/stable/main/finkinfo/sci/octave-3.8.2-clang-libcxx.patch
> fi
> patching file liboctave/operators/libcxx-fix.h
> patching file liboctave/operators/mx-inlines.cc
> sudo -u fink-bld [ENV] sh -c /tmp/fink.DQHMD
> /tmp/fink.l6P5g
> #!/bin/sh -ev
> # Encode Fink compiler wrappers
> if [ "." = "-x11" ] ; then
> export CXXFLAGS="$CXXFLAGS -I/usr/X11/include"
> fi
> export F77=/sw/bin/gfortran-fsf-4.9
> # -ff2c is required when using gfortran and Accelerate.framework
> if [ "-atlas" = "." ]
> then export FFLAGS='-O3 -ff2c'
> else export FFLAGS='-O3'
> fi
> FLIBDIR="/sw/lib/gcc4.9/lib"
> export FLIBS="-L${FLIBDIR} -lgfortran"
> export PKG_CONFIG=/sw/bin/pykg-config
> qt_type=`echo | cut -dt -f2`
> echo | cut -dt -f2
> if [ "." != "." ] ; then
> export
> PKG_CONFIG_PATH="/sw/lib/qt4-$qt_type/lib/pkgconfig:$PKG_CONFIG_PATH"
> export PATH="/sw/lib/qt4-$qt_type/bin:$PATH"
> # QtCore is inherited
> export LDFLAGS=`pkg-config QtNetwork --libs`" "`pkg-config QtGui
> --libs`" -L/sw/lib/qt4-$qt_type/lib $LDFLAGS"
> fi
>
> ./configure --prefix=/sw \
> \
> --with-lapack="-ltatlas" \
> --with-blas="-ltatlas" \
> \
> \
> --with-framework-carbon \
> \
> \
> \
> \
> --with-magick=GraphicsMagick \
> --with-qhull-includedir=/sw/include/libqhull \
> --host=x86_64-apple-darwin \
> --build=x86_64-apple-darwin \
> --infodir='${prefix}/share/info' \
> --mandir='${prefix}/share/man' \
> --libexecdir='${prefix}/lib' \
> --enable-shared \
> --enable-dl \
> --disable-static \
> --disable-gui \
> --enable-dependency-tracking
> checking for a BSD-compatible install... /sw/bin/ginstall -c
> checking whether build environment is sane... yes
> checking for a thread-safe mkdir -p... /sw/bin/gmkdir -p
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking whether make supports nested variables... yes
> checking whether UID '601' is supported by ustar format... yes
> checking whether GID '600' is supported by ustar format... yes
> checking how to create a ustar tar archive... gnutar
> checking whether make supports nested variables... (cached) yes
> checking build system type... x86_64-apple-darwin
> checking host system type... x86_64-apple-darwin
> checking for style of include used by make... GNU
> checking for x86_64-apple-darwin-gcc... oct-cc
> checking whether the C compiler works... no
> configure: error: in `/sw/src/fink.build/octave-atlas-3.8.2-1/octave-3.8.2':
> configure: error: C compiler cannot create executables
> See `config.log' for more details
> ### execution of /tmp/fink.l6P5g failed, exit code 77
> ### execution of /tmp/fink.DQHMD failed, exit code 77
> Removing runtime build-lock...
> Removing build-lock package...
> /sw/bin/dpkg-lockwait -r fink-buildlock-octave-atlas-3.8.2-1
> (Reading database ... 146670 files and directories currently installed.)
> Removing fink-buildlock-octave-atlas-3.8.2-1 ...
> Failed: phase compiling: octave-atlas-3.8.2-1 failed
>
> BR,
> Petri Piila
>
>
Repeating a message to me in less than an hour with a new subject won't
change the rate at which I work. I work on this project at _my_ pace,
since nobody is paying me.
In any case, I put out a fix for fink-octave-scripts already (now at
version 0.3.2) between the time of your prior message and this one. It
might not have been available via "fink selfupdate" when you sent this,
though.
--
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/
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