Jack, No dice, after rebuilding r-base the error is still the same. Fink is fully up to date and /usr/local doesn’t exist. I checked the freshly built R really did get installed:
ls -l /sw/bin/R 8 lrwxr-xr-x 1 root admin 63 Oct 25 18:42 /sw/bin/R@ -> /sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R ls -l /sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R 24 -rwxr-xr-x 1 root admin 8866 Oct 25 18:42 /sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R* This is a case-sensitive file system, I can’t think of anything else non-standard I’ve done. I don’t currently have anything else cran-* installed, just r-base,shlibs,dev. Can you think of anything else I could check? many thanks, — Viv On 25 Oct 2014, at 17:39, Viv Kendon <[email protected]> wrote: > Jack, > > Hmmm, maybe I need to rebuild R, possibly it got built with an earlier java > installed. I will try that after the current thing I’m building finishes… > > many thanks, > — Viv > > > On 25 Oct 2014, at 17:08, Jack Howarth <[email protected]> wrote: > >> Viv, >> On reflection, the problem looks more like with R itself... >> >> pushd /sw/src/fink.build/cran-javagd-r31-0.6-1-1/JavaGD/.. && $BIN_R >> --verbose CMD install >> --library=/sw/src/fink.build/root-cran-javagd-r31-0.6-1-1/sw/lib/R/3.1/site-library >> JavaGD >> /sw/src/fink.build/cran-javagd-r31-0.6-1-1 >> /sw/src/fink.build/cran-javagd-r31-0.6-1-1/JavaGD >> install: illegal option -- - >> usage: install [-bCcpSsv] [-B suffix] [-f flags] [-g group] [-m mode] >> [-o owner] file1 file2 >> install [-bCcpSsv] [-B suffix] [-f flags] [-g group] [-m mode] >> [-o owner] file1 ... fileN directory >> install -d [-v] [-g group] [-m mode] [-o owner] directory ... >> >> Did you 'fink self update' and 'fink update-all' first? I don't have any >> problems with 'fink install cran-javagd-r31' here. >> Jack >> ps Of course, you also want to move /usr/local aside to make sure there >> isn't any third-party packages interfering with fink. >> >> On Sat, Oct 25, 2014 at 11:43 AM, Viv Kendon <[email protected]> wrote: >> Jack, >> >> well, fink thinks it is installed: >> >> i system-java 1.7.0-1 [virtual package representing Java 1.7.0] >> i system-java-dev 1.7.0-1 [virtual package representing Java SDK 1.7.0] >> i system-java17 1.7.0-1 [virtual package representing Java 1.7.0] >> i system-java17-dev 1.7.0-1 [virtual package representing Java >> 1.7.0 development headers] >> >>>> java -version >> java version "1.7.0_51" >> Java(TM) SE Runtime Environment (build 1.7.0_51-b13) >> Java HotSpot(TM) 64-Bit Server VM (build 24.51-b03, mixed mode) >> >> This is a headless machine, could I have missed some licence agreement step >> for it?? >> >> many thanks, >> — Viv >> >> >> On 25 Oct 2014, at 13:07, Jack Howarth <[email protected]> wrote: >> >>> Viv, >>> Do you have Oracle JDK installed? Depending on whether you have already >>> installed JRE 1.7 and 1.8, it can be download from... >>> >>> http://www.oracle.com/technetwork/java/javase/downloads/jdk7-downloads-1880260.html >>> >>> or >>> >>> http://www.oracle.com/technetwork/java/javase/downloads/jdk8-downloads-2133151.html >>> >>> I have only tested the against JDK7 so can't say how much breakage in the >>> packages using java will be >>> caused by building fink against JDK8 instead. >>> Jack >>> >>> On Sat, Oct 25, 2014 at 5:24 AM, Viv Kendon <[email protected]> wrote: >>> Hope this is enough of the relevant details: >>> >>> * building 'JavaGD_0.6-1.tar.gz' >>> >>> /bin/rm -rf /sw/src/fink.build/root-cran-javagd-r31-0.6-1-1 >>> /bin/mkdir -p /sw/src/fink.build/root-cran-javagd-r31-0.6-1-1/sw >>> /bin/mkdir -p /sw/src/fink.build/root-cran-javagd-r31-0.6-1-1/DEBIAN >>> /usr/sbin/chown -R fink-bld:fink-bld >>> /sw/src/fink.build/root-cran-javagd-r31-0.6-1-1 >>> sudo -u fink-bld [ENV] sh -c /tmp/fink.DVqRm >>> /tmp/fink.SkoUV >>> #!/bin/sh -ev >>> BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R >>> >>> mkdir -p >>> /sw/src/fink.build/root-cran-javagd-r31-0.6-1-1/sw/lib/R/3.1/site-library >>> pushd /sw/src/fink.build/cran-javagd-r31-0.6-1-1/JavaGD/.. && $BIN_R >>> --verbose CMD install >>> --library=/sw/src/fink.build/root-cran-javagd-r31-0.6-1-1/sw/lib/R/3.1/site-library >>> JavaGD >>> /sw/src/fink.build/cran-javagd-r31-0.6-1-1 >>> /sw/src/fink.build/cran-javagd-r31-0.6-1-1/JavaGD >>> install: illegal option -- - >>> usage: install [-bCcpSsv] [-B suffix] [-f flags] [-g group] [-m mode] >>> [-o owner] file1 file2 >>> install [-bCcpSsv] [-B suffix] [-f flags] [-g group] [-m mode] >>> [-o owner] file1 ... fileN directory >>> install -d [-v] [-g group] [-m mode] [-o owner] directory ... >>> ### execution of /tmp/fink.SkoUV failed, exit code 64 >>> ### execution of /tmp/fink.DVqRm failed, exit code 64 >>> >>> >>> Package manager version: 0.38.1 >>> Distribution version: selfupdate-rsync Sat Oct 25 09:25:32 2014, 10.9, >>> x86_64 >>> Trees: local/main stable/main >>> Xcode.app: 6.0.1 >>> Xcode command-line tools: 6.0.0.0.1.1410400753 >>> Max. Fink build jobs: 18 >>> >>> Many thanks, >>> — Viv >>> >> >> > ------------------------------------------------------------------------------ _______________________________________________ Fink-users mailing list [email protected] List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
