Hi guys,
Looks like another failure at the compiling level of gcc...
Thanks,
Saleh
---------------------------------------
....
.... many lines deleted ...
....
....
checking for psignal... yes
checking for int16_t... config.status: executing gstdint.h commands
yes
checking for sbrk... yes
checking for pstat_getdynamic... yes
checking for spawnve... yes
checking for int32_t... no
checking for pstat_getstatic... no
checking for spawnvpe... no
checking for realpath... yes
checking for int64_t... no
checking for strerror... make[3]: Entering directory
'/sw/src/fink.build/gcc46-4.6.4-1002/darwin_objdir/intl'
rm -f stamp-h1
/bin/sh ./config.status config.h
yes
checking for sbrk... yes
checking for long long int... yes
yes
checking for strsignal... checking for spawnve... config.status: creating
config.h
config.status: config.h is unchanged
cp ../../gcc-4.6.4/intl/libgnuintl.h libintl.h
test -f config.h || (rm -f stamp-h1 && make stamp-h1)
gcc -c -g -fkeep-inline-functions -DHAVE_CONFIG_H -I. -I../../gcc-4.6.4/intl
../../gcc-4.6.4/intl/bindtextdom.c
yes
In file included from ../../gcc-4.6.4/intl/bindtextdom.c:23:
/usr/bin/../lib/clang/4.2/include/stddef.h:35:33: error: cannot combine with
previous 'typeof' declaration
specifier
typedef __typeof__(sizeof(int)) size_t;
^
./config.h:245:25: note: expanded from macro 'size_t'
#define size_t unsigned int
^
In file included from ../../gcc-4.6.4/intl/bindtextdom.c:23:
/usr/bin/../lib/clang/4.2/include/stddef.h:35:33: error: 'typeof' cannot be
signed or unsigned
typedef __typeof__(sizeof(int)) size_t;
^
./config.h:245:16: note: expanded from macro 'size_t'
#define size_t unsigned int
^
checking for sysconf... yes
checking for intmax_t... 2 errors generated.
Makefile:133: recipe for target 'bindtextdom.o' failed
make[3]: *** [bindtextdom.o] Error 1
make[3]: Leaving directory
'/sw/src/fink.build/gcc46-4.6.4-1002/darwin_objdir/intl'
Makefile:7680: recipe for target 'all-stage1-intl' failed
make[2]: *** [all-stage1-intl] Error 2
make[2]: *** Waiting for unfinished jobs....
no
checking for spawnvpe... yes
checking for sysctl... no
checking for strerror... yes
checking for intptr_t... yes
checking for sysmp... yes
checking for strsignal... no
checking for table... yes
checking for uint8_t... yes
yes
checking for uint16_t... checking for sysconf... no
checking for times... yes
checking for uint32_t... yes
yes
yes
checking for uint64_t... checking for sysctl... checking for wait3... yes
checking for unsigned long long int... yes
yes
checking for sysmp... checking for wait4... yes
checking for uintmax_t... yes
no
checking for table... checking whether basename is declared... yes
checking for uintptr_t... no
checking for times... no
checking whether ffs is declared... yes
yes
checking for wait3... checking whether asprintf is declared... yes
checking whether gcc supports -W... yes
yes
yes
checking whether gcc supports -Wall... checking whether vasprintf is
declared... checking for wait4... yes
checking whether gcc supports -Wwrite-strings... yes
checking whether snprintf is declared... yes
yes
checking whether gcc supports -Wcast-qual... checking whether basename is
declared... yes
yes
checking whether gcc supports -Wstrict-prototypes... checking whether vsnprintf
is declared... yes
checking whether gcc supports -Wmissing-prototypes... no
yes
checking whether ffs is declared... yes
checking whether calloc is declared... checking whether gcc supports
-Wmissing-format-attribute... yes
yes
yes
checking whether gcc supports -Wold-style-definition... checking whether getenv
is declared... checking whether asprintf is declared... yes
yes
yes
checking whether gcc supports -Wc++-compat... checking whether getopt is
declared... checking whether vasprintf is declared... yes
checking whether gcc supports -pedantic -Wno-long-long -Wno-variadic-macros
-Wno-overlength-strings... yes
yes
yes
checking valgrind.h usability... checking whether malloc is declared...
checking whether snprintf is declared... yes
yes
no
checking valgrind.h presence... checking whether realloc is declared...
checking whether vsnprintf is declared... no
checking for valgrind.h... no
checking for multiarch configuration... auto
configure: WARNING: decimal float is not supported for this target, ignored
yes
configure: WARNING: fixed-point is not supported for this target, ignored
yes
checking whether make sets $(MAKE)... checking whether sbrk is declared...
checking whether calloc is declared... yes
checking for gawk... gawk
checking whether ln -s works... yes
checking whether ln works... yes
checking for x86_64-apple-darwin11.4.2-ranlib... ranlib
checking for a BSD compatible install... /sw/bin/ginstall -c
checking for cmp's capabilities... yes
gnucompare
checking for mktemp... yes
checking for makeinfo... makeinfo --split-size=5000000 --split-size=5000000
checking for modern makeinfo... yes
checking whether strverscmp is declared... checking whether getenv is
declared... yes
no
checking whether canonicalize_file_name must be declared... checking whether
getopt is declared... yes
yes
checking whether malloc is declared... checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for getpagesize... (cached) yes
checking for working mmap... yes
checking whether realloc is declared... yes
yes
checking for working strncmp... checking whether sbrk is declared... yes
yes
checking whether strverscmp is declared... yes
checking for recent Pod::Man... configure: updating cache ../config.cache
no
checking whether canonicalize_file_name must be declared... configure: creating
./config.status
yes
checking for flex... flex
checking for bison... bison
checking for nm... nm
checking for ar... ar
checking for ANSI C header files... (cached) yes
checking whether time.h and sys/time.h may both be included... yes
checking for stdlib.h... (cached) yes
yes
checking whether string.h and strings.h may both be included... checking for
unistd.h... (cached) yes
checking for getpagesize... (cached) yes
yes
checking for sys/wait.h that is POSIX.1 compatible... checking for working
mmap... yes
checking for limits.h... yes
yes
checking for working strncmp... checking for stddef.h... yes
checking for string.h... (cached) yes
yes
config.status: creating Makefile
checking for strings.h... (cached) yes
checking for stdlib.h... (cached) yes
configure: updating cache ./config.cache
config.status: creating testsuite/Makefile
checking for time.h... yes
configure: creating ./config.status
checking for iconv.h... config.status: creating config.h
config.status: executing default commands
yes
checking for fcntl.h... yes
checking for unistd.h... (cached) yes
checking for sys/file.h... yes
checking for sys/time.h... yes
checking for sys/mman.h... yes
checking for sys/resource.h... config.status: creating Makefile
yes
checking for sys/param.h... config.status: creating testsuite/Makefile
yes
checking for sys/times.h... config.status: creating config.h
yes
config.status: executing default commands
checking for sys/stat.h... (cached) yes
checking for direct.h... no
checking for malloc.h... no
checking for langinfo.h... yes
checking for ldfcn.h... no
checking for locale.h... yes
checking for wchar.h... yes
checking for thread.h... no
checking for pthread.h... yes
checking for CHAR_BIT... yes
checking whether byte ordering is bigendian... no
checking how to run the C++ preprocessor... g++ -E
checking for unordered_map... no
checking for tr1/unordered_map... yes
checking for ext/hash_map... yes
checking for collect2 libraries... none required
checking for library containing exc_resume... no
checking for library containing ldexp... none required
checking for inttypes.h... yes
checking for times... yes
checking for clock... yes
checking for kill... yes
checking for getrlimit... yes
checking for setrlimit... yes
checking for atoll... yes
checking for atoq... no
checking for sysconf... yes
checking for strsignal... yes
checking for getrusage... yes
checking for nl_langinfo... yes
checking for gettimeofday... yes
checking for mbstowcs... yes
checking for wcswidth... yes
checking for mmap... yes
checking for setlocale... yes
checking for clearerr_unlocked... yes
checking for feof_unlocked... yes
checking for ferror_unlocked... yes
checking for fflush_unlocked... no
checking for fgetc_unlocked... no
checking for fgets_unlocked... no
checking for fileno_unlocked... yes
checking for fprintf_unlocked... no
checking for fputc_unlocked... no
checking for fputs_unlocked... no
checking for fread_unlocked... no
checking for fwrite_unlocked... no
checking for getchar_unlocked... yes
checking for getc_unlocked... yes
checking for putchar_unlocked... yes
checking for putc_unlocked... yes
checking whether mbstowcs works... yes
checking for ssize_t... yes
checking for caddr_t... yes
checking for sys/mman.h... (cached) yes
checking for mmap... (cached) yes
checking whether read-only mmap of a plain file works... yes
checking whether mmap from /dev/zero works... no
checking for MAP_ANON(YMOUS)... yes
checking whether mmap with MAP_ANON(YMOUS) works... yes
checking for pid_t... yes
checking for vfork.h... no
checking for fork... yes
checking for vfork... yes
checking for working fork... yes
checking for working vfork... (cached) yes
checking for ld used by GCC... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... no
checking for shared library run path origin... done
checking for iconv... yes
checking how to link with libiconv... -L/sw/lib -liconv
checking for iconv declaration... install-shextern size_t iconv (iconv_t cd,
char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for LC_MESSAGES... yes
checking for nl_langinfo and CODESET... yes
checking whether getenv is declared... yes
checking whether atol is declared... yes
checking whether asprintf is declared... yes
checking whether sbrk is declared... yes
checking whether abort is declared... yes
checking whether atof is declared... yes
checking whether getcwd is declared... yes
checking whether getwd is declared... yes
checking whether strsignal is declared... yes
checking whether strstr is declared... yes
checking whether strverscmp is declared... no
checking whether errno is declared... yes
checking whether snprintf is declared... yes
checking whether vsnprintf is declared... yes
checking whether vasprintf is declared... yes
checking whether malloc is declared... yes
checking whether realloc is declared... yes
checking whether calloc is declared... yes
checking whether free is declared... yes
checking whether basename is declared... no
checking whether getopt is declared... yes
checking whether clock is declared... yes
checking whether getpagesize is declared... yes
checking whether clearerr_unlocked is declared... yes
checking whether feof_unlocked is declared... yes
checking whether ferror_unlocked is declared... yes
checking whether fflush_unlocked is declared... no
checking whether fgetc_unlocked is declared... no
checking whether fgets_unlocked is declared... no
checking whether fileno_unlocked is declared... yes
checking whether fprintf_unlocked is declared... no
checking whether fputc_unlocked is declared... no
checking whether fputs_unlocked is declared... no
checking whether fread_unlocked is declared... no
checking whether fwrite_unlocked is declared... no
checking whether getchar_unlocked is declared... yes
checking whether getc_unlocked is declared... yes
checking whether putchar_unlocked is declared... yes
checking whether putc_unlocked is declared... yes
checking whether getrlimit is declared... yes
checking whether setrlimit is declared... yes
checking whether getrusage is declared... yes
checking whether ldgetname is declared... no
checking whether times is declared... yes
checking whether sigaltstack is declared... yes
checking for struct tms... yes
checking for clock_t... yes
checking for .preinit_array/.init_array/.fini_array support... no
checking if mkdir takes one argument... no
Using `../../gcc-4.6.4/gcc/config/i386/i386.c' for machine-specific logic.
Using `../../gcc-4.6.4/gcc/config/i386/i386.md' as machine description file.
Using the following target machine macro files:
../../gcc-4.6.4/gcc/config/vxworks-dummy.h
../../gcc-4.6.4/gcc/config/i386/biarch64.h
../../gcc-4.6.4/gcc/config/i386/i386.h
../../gcc-4.6.4/gcc/config/darwin.h
../../gcc-4.6.4/gcc/config/darwin9.h
../../gcc-4.6.4/gcc/config/darwin10.h
../../gcc-4.6.4/gcc/config/i386/darwin.h
../../gcc-4.6.4/gcc/config/i386/darwin64.h
Using host-darwin.o host-i386-darwin.o for host machine hooks.
checking for __cxa_atexit... yes
checking whether NLS is requested... yes
checking for catalogs to be installed... be da de el es fi fr id ja nl ru sr
sv tr vi zh_CN zh_TW be da de el es fi fr id ja nl ru sr sv tr vi zh_CN zh_TW
checking how to print strings... printf
checking for a sed that does not truncate output... /sw/bin/sed
checking for fgrep... /sw/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... nm
checking the name lister (nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for x86_64-apple-darwin11.4.2-objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-apple-darwin11.4.2-ar... (cached) ar
checking for x86_64-apple-darwin11.4.2-strip... no
checking for strip... strip
checking for x86_64-apple-darwin11.4.2-ranlib... (cached) ranlib
checking command to parse nm output from gcc object... ok
checking for x86_64-apple-darwin11.4.2-dsymutil... no
checking for dsymutil... dsymutil
checking for x86_64-apple-darwin11.4.2-nmedit... no
checking for nmedit... nmedit
checking for x86_64-apple-darwin11.4.2-lipo... no
checking for lipo... lipo
checking for x86_64-apple-darwin11.4.2-otool... no
checking for otool... otool
checking for x86_64-apple-darwin11.4.2-otool64... no
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for -force_load linker flag... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... yes
checking for gcc option to produce PIC... -fno-common -DPIC
checking if gcc PIC flag -fno-common -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin11.4.2 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... no
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fno-common -DPIC
checking if g++ PIC flag -fno-common -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin11.4.2 dyld
checking how to hardcode library paths into programs... immediate
checking for as... /usr/bin/as
checking what assembler to use... /usr/bin/as
checking whether we are using gold... no
checking what linker to use... /usr/bin/ld
checking for nm... /usr/bin/nm
checking what nm to use... /usr/bin/nm
checking for objdump... no
checking what objdump to use... not found
checking for readelf... no
checking what readelf to use... not found
checking assembler flags...
checking assembler for .balign and .p2align... yes
checking assembler for .p2align with maximum skip... yes
checking assembler for .literal16... yes
checking assembler for working .subsection -1... no
checking assembler for .weak... no
checking assembler for .weakref... no
checking assembler for .nsubspa comdat... no
checking assembler for .hidden... no
checking linker for .hidden support... no
checking linker read-only and read-write section mixing... unknown
checking assembler for .sleb128 and .uleb128... no
checking assembler for cfi directives... no
checking assembler for cfi personality directive... no
checking assembler for cfi sections directive... no
checking assembler for eh_frame optimization... no
checking assembler for section merging support... no
checking assembler for section merging support... (cached) no
checking assembler for COMDAT group support... no
checking assembler for COMDAT group support... no
checking assembler for line table discriminator support... no
checking assembler for thread-local storage support... no
checking linker -Bstatic/-Bdynamic option... no
checking linker plugin support... no
checking assembler for filds and fists mnemonics... no
checking assembler for fildq and fistpq mnemonics... no
checking assembler for cmov syntax... no
checking assembler for ffreep mnemonic... yes
checking assembler for .quad directive... yes
checking assembler for sahf mnemonic... yes
checking assembler for swap suffix... no
checking assembler for different section symbol subtraction... no
checking assembler for GOTOFF in data... no
checking assembler for rep and lock prefix... yes
checking assembler for dwarf2 debug_line support... no
checking assembler for buggy dwarf2 .file directive... no
checking assembler for --gdwarf2 option... yes
checking assembler for --gstabs option... yes
checking assembler for --debug-prefix-map option... no
checking assembler for .lcomm with alignment... yes
checking assembler for gnu_unique_object... no
checking assembler for tolerance to line number 0... yes
checking linker PT_GNU_EH_FRAME support... no
checking linker position independent executable support... no
checking linker EH-compatible garbage collection of sections... no
checking linker EH garbage collection of sections bug... no
checking linker --as-needed support... no
checking linker --build-id support... no
checking linker *_sol2 emulation support... no
checking linker --sysroot support... no
checking __stack_chk_fail in target C library... checking for
__stack_chk_fail... yes
yes
checking dl_iterate_phdr in target C library... unknown
Using ggc-page for garbage collection.
checking whether to enable maintainer-specific portions of Makefiles... no
Links are now set up to build a native compiler for x86_64-apple-darwin11.4.2.
checking for exported symbols... yes
checking for library containing dlopen... none required
checking for -fPIC -shared... yes
configure: updating cache ./config.cache
configure: creating ./config.status
config.status: creating as
config.status: creating collect-ld
config.status: creating nm
config.status: creating Makefile
config.status: creating ada/gcc-interface/Makefile
config.status: creating ada/Makefile
config.status: creating auto-host.h
config.status: executing default commands
make[2]: Leaving directory '/sw/src/fink.build/gcc46-4.6.4-1002/darwin_objdir'
Makefile:19980: recipe for target 'stage1-bubble' failed
make[1]: *** [stage1-bubble] Error 2
make[1]: Leaving directory '/sw/src/fink.build/gcc46-4.6.4-1002/darwin_objdir'
Makefile:20263: recipe for target 'bootstrap-lean' failed
make: *** [bootstrap-lean] Error 2
### execution of /tmp/fink.kO0Lw failed, exit code 2
### execution of /tmp/fink.yM5aq failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-gcc46-4.6.4-1002
(Reading database ... 264461 files and directories currently installed.)
Removing fink-buildlock-gcc46-4.6.4-1002 ...
Updating the list of locally available binary packages.
Scanning dists/stable/main/binary-darwin-x86_64
New package:
dists/stable/main/binary-darwin-x86_64/languages/gcc47-compiler_4.7.4-1001_darwin-x86_64.deb
New package:
dists/stable/main/binary-darwin-x86_64/languages/gcc47-shlibs_4.7.4-1001_darwin-x86_64.deb
New package:
dists/stable/main/binary-darwin-x86_64/languages/gcc47_4.7.4-1001_darwin-x86_64.deb
Failed: phase compiling: gcc46-4.6.4-1002 failed
Before reporting any errors, please run "fink selfupdate" and try again.
Also try using "fink configure" to set your maximum build jobs to 1 and
attempt to build the package again.
If you continue to have issues, please check to see if the FAQ on Fink's
website solves the problem. If not, ask on one (not both, please) of
these mailing lists:
The Fink Users List <fink-users@lists.sourceforge.net>
The Fink Beginners List <fink-beginn...@lists.sourceforge.net>,
with a carbon copy to the maintainer:
Jack Howarth <howarth.at.f...@gmail.com>
Note that this is preferable to emailing just the maintainer directly,
since most fink package maintainers do not have access to all possible
hardware and software configurations.
Please try to include the complete error message in your report. This
generally consists of a compiler line starting with e.g. "gcc" or "g++"
followed by the actual error output from the compiler.
Also include the following system information:
Package manager version: 0.38.3
Distribution version: selfupdate-rsync Sat Dec 6 20:30:32 2014, 10.7, x86_64
Trees: local/main stable/main
Xcode.app: 4.6.3
Xcode command-line tools: 4.6.0.0.1.1365549073
Max. Fink build jobs: 4
On Nov 28, 2014, at 1:01 PM, Alexander Hansen wrote:
>
>> On Nov 28, 2014, at 12:51 PM, Saleh Elmohamed
>> <m.a.saleh.elmoha...@gmail.com> wrote:
>>
>> Hi Alex,
>>
>> Hope all is going well. I hope you don't mind me bugging you
>> quite a bit with those problems....
>> I'm still running into bugs trying to update fink via selfupdate ....
>>
>> Many thanks,
>> Saleh
>>
>> ------------------------------------------------------------------------------------
>>
>> $ fink selfupdate
>>
>>
>> /usr/bin/rsync -az -v
>> rsync://distfiles.master.finkmirrors.net/finkinfo//TIMESTAMP
>> /sw/fink/TIMESTAMP.tmp
>> receiving file list ... done
>> TIMESTAMP
>>
>> sent 38 bytes received 126 bytes 328.00 bytes/sec
>> total size is 11 speedup is 0.07
>> I will now run the rsync command to retrieve the latest package
>> descriptions.
>> /usr/bin/su saleh -c "/usr/bin/rsync -rtz --delete-after --delete -v
>> --include='10.7/' --include='10.7/stable/' --include='10.7/stable/main/'
>> --include='10.7/stable/main/finkinfo/'
>> --include='10.7/stable/main/finkinfo/*/'
>> --include='10.7/stable/main/finkinfo/*'
>> --include='10.7/stable/main/finkinfo/**/*' --include='VERSION'
>> --include='DISTRIBUTION' --include='README' --exclude='**'
>> 'rsync://distfiles.master.finkmirrors.net/finkinfo' '/sw/fink/'"
>> receiving file list ... done
>> ./
>> 10.7/
>>
>> sent 266 bytes received 161288 bytes 107702.67 bytes/sec
>> total size is 23049624 speedup is 142.67
>> Scanning package description files..........
>> Information about 11350 packages read in 1 seconds.
>> No packages to install.
>>
>> The core packages have been updated. You should now update the other
>> packages using commands like 'fink update-all'.
>>
>> ------------------------------------
>> $ fink update-all
>>
>>
>
> <snip>
>
>> Can't resolve dependency "hwloc-dev (>= 1.10.0-2)" for package
>> "openmpi-1.8.3-2" (no matching packages/versions found)
>> Exiting with failure.
>>
>>
>
>
> This is a matter for the openmpi / whelk maintainer (cc’ed) to field. What
> OS X version are you on, and what does “fink -V” give?
> --
> Alexander Hansen, Ph.D.
> Fink User Liaison
>
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