Hello,

with a fresh, clean fink, I tried sudo fink install libusb avrdude.

Apparently fink does not view doxygen as a dependency, so it is not installed 
automatically:

-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE) 
-- Not generating API documentation

Accordingly everything builds neatly, but doc/ is missing.

ls -l /sw/src/fink.build/libftdi1-1.1-3/libftdi1-1.1/build
total 160
-rw-r--r--   1 fink-bld  fink-bld  19101 17 Jan 10:59 CMakeCache.txt
drwxr-xr-x  14 fink-bld  fink-bld    476 17 Jan 11:00 CMakeFiles
-rw-r--r--   1 fink-bld  fink-bld   4332 17 Jan 10:59 CPackConfig.cmake
-rw-r--r--   1 fink-bld  fink-bld   4559 17 Jan 10:59 CPackSourceConfig.cmake
-rw-r--r--   1 fink-bld  fink-bld   2384 17 Jan 10:59 LibFTDI1Config.cmake
-rw-r--r--   1 fink-bld  fink-bld  14107 17 Jan 10:59 Makefile
-rw-r--r--   1 fink-bld  fink-bld   2981 17 Jan 10:59 cmake_install.cmake
drwxr-xr-x  16 fink-bld  fink-bld    544 17 Jan 10:59 examples
drwxr-xr-x   5 fink-bld  fink-bld    170 17 Jan 10:59 ftdi_eeprom
drwxr-xr-x   9 fink-bld  fink-bld    306 17 Jan 10:59 ftdipp
-rw-r--r--   1 fink-bld  fink-bld    429 17 Jan 11:00 install_manifest.txt
-rw-r--r--   1 fink-bld  fink-bld   1254 17 Jan 10:59 libftdi1-config
-rw-r--r--   1 fink-bld  fink-bld    246 17 Jan 10:59 libftdi1.pc
-rw-r--r--   1 fink-bld  fink-bld   2580 17 Jan 10:59 libftdi1.spec
-rw-r--r--   1 fink-bld  fink-bld    218 17 Jan 10:59 libftdipp1.pc
drwxr-xr-x   5 fink-bld  fink-bld    170 17 Jan 10:59 packages
drwxr-xr-x   5 fink-bld  fink-bld    170 17 Jan 10:59 python
drwxr-xr-x  10 fink-bld  fink-bld    340 17 Jan 10:59 src
drwxr-xr-x   7 fink-bld  fink-bld    238 17 Jan 11:00 test

But fink's perl script cannot cope with this:

  rm -f doc/man/man3/_*
  mv doc/man /sw/src/fink.build/root-libftdi1-1.1-3/sw/share
mv: rename doc/man to /sw/src/fink.build/root-libftdi1-1.1-3/sw/share/man: No 
such file or directory
### execution of /tmp/fink.fR4AK failed, exit code 1
### execution of /tmp/fink.sIVNM failed, exit code 1

libusb and libftdi install fine after sudo fink install doxygen.

Thanks
Peter

System information:
Package manager version: 0.38.3
Distribution version: selfupdate-rsync Sat Jan 17 10:58:44 2015, 10.7, x86_64
Trees: local/main stable/main
Xcode.app: 4.6.3
Xcode command-line tools: 4.6.0.0.1.1365549073
Max. Fink build jobs:  2

Complete console output:
sudo fink install libusb avrdude
Information about 11379 packages read in 1 seconds.
The following package will be installed or updated:
 avrdude
The following 2 additional packages will be installed:
 libftdi1 libftdi1-shlibs
Default answer will be chosen in 60 seconds...
Do you want to continue? [Y/n] 
Setting runtime build-lock...
dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-libftdi1-1.1-3 
/sw/src/fink.build
dpkg-deb: baue Paket »fink-buildlock-libftdi1-1.1-3« in 
»/sw/src/fink.build/fink-buildlock-libftdi1-1.1-3_2015.01.17-10.59.46_darwin-x86_64.deb«.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i 
/sw/src/fink.build/fink-buildlock-libftdi1-1.1-3_2015.01.17-10.59.46_darwin-x86_64.deb
Selecting previously deselected package fink-buildlock-libftdi1-1.1-3.
(Reading database ... 85006 files and directories currently installed.)
Unpacking fink-buildlock-libftdi1-1.1-3 (from 
.../fink-buildlock-libftdi1-1.1-3_2015.01.17-10.59.46_darwin-x86_64.deb) ...
Setting up fink-buildlock-libftdi1-1.1-3 (2015.01.17-10.59.46) ...

sudo -u fink-bld [ENV] sh -c /tmp/fink.l8UJw
env LANG=C LC_ALL=C /sw/bin/tar  --no-same-owner --no-same-permissions -xf 
/sw/src/libftdi1-1.1.tar.bz2
sudo -u fink-bld [ENV] sh -c /tmp/fink.UzDB1
/tmp/fink.i5ZUj
#!/bin/sh -ev
  mkdir build
  cd build
  cmake -DPYTHON_BINDINGS=off -DBOOST_ROOT="/sw/opt/boost-1_55" 
-DCMAKE_INSTALL_PREFIX=/sw ../
-- The C compiler identification is AppleClang 4.2.0.4250028
-- The CXX compiler identification is AppleClang 4.2.0.4250028
-- Check for working C compiler: /sw/var/lib/fink/path-prefix-clang/cc
-- Check for working C compiler: /sw/var/lib/fink/path-prefix-clang/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /sw/var/lib/fink/path-prefix-clang/c++
-- Check for working CXX compiler: /sw/var/lib/fink/path-prefix-clang/c++ -- 
works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Build type: RelWithDebInfo
-- Found PkgConfig: /sw/bin/pkg-config (found version "0.28") 
-- checking for module 'libusb-1.0'
--   found libusb-1.0, version 1.0.18
-- Found LIBUSB: /sw/lib/libusb-1.0.dylib  
-- Boost version: 1.55.0
-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE) 
-- Not generating API documentation
fatal: Not a git repository (or any of the parent directories): .git
-- Detected git snapshot version: unknown
-- Building libftdi1++
-- Not building python bindings
-- Could NOT find Confuse (missing:  CONFUSE_LIBRARY CONFUSE_INCLUDE_DIR) 
-- Looking for dgettext
-- Looking for dgettext - not found
-- Found Libintl: /usr/local/include  
-- libConfuse not found, won't build ftdi_eeprom
-- Building example programs.
-- Building libftdi++ examples.
-- Boost version: 1.55.0
-- Found the following Boost libraries:
--   unit_test_framework
-- Building unit test
-- Configuring done
CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ftdi1
   ftdipp1

This warning is for project developers.  Use -Wno-dev to suppress it.

-- Generating done
-- Build files have been written to: 
/sw/src/fink.build/libftdi1-1.1-3/libftdi1-1.1/build
  make
Scanning dependencies of target ftdi1-static
Scanning dependencies of target ftdi1
[  5%] [ 10%] Building C object src/CMakeFiles/ftdi1-static.dir/ftdi.c.o
Building C object src/CMakeFiles/ftdi1.dir/ftdi.c.o
[ 15%] Building C object src/CMakeFiles/ftdi1-static.dir/ftdi_stream.c.o
[ 21%] Building C object src/CMakeFiles/ftdi1.dir/ftdi_stream.c.o
Linking C static library libftdi1.a
Linking C shared library libftdi1.dylib
[ 21%] Built target ftdi1-static
[ 21%] Built target ftdi1
Scanning dependencies of target ftdipp1-static
Scanning dependencies of target ftdipp1
[ 26%] [ 31%] Building CXX object 
ftdipp/CMakeFiles/ftdipp1-static.dir/ftdi.cpp.o
Building CXX object ftdipp/CMakeFiles/ftdipp1.dir/ftdi.cpp.o
Linking CXX static library libftdipp1.a
Linking CXX shared library libftdipp1.dylib
[ 31%] Built target ftdipp1
[ 31%] Built target ftdipp1-static
Scanning dependencies of target baud_test
Scanning dependencies of target bitbang
[ 36%] [ 42%] Building C object examples/CMakeFiles/baud_test.dir/baud_test.c.o
Building C object examples/CMakeFiles/bitbang.dir/bitbang.c.o
Linking C executable bitbang
Linking C executable baud_test
[ 42%] Built target bitbang
[ 42%] Built target baud_test
Scanning dependencies of target bitbang2
[ 47%] Scanning dependencies of target bitbang_cbus
Building C object examples/CMakeFiles/bitbang2.dir/bitbang2.c.o
[ 52%] Building C object examples/CMakeFiles/bitbang_cbus.dir/bitbang_cbus.c.o
Linking C executable bitbang2
Linking C executable bitbang_cbus
[ 52%] Built target bitbang2
[ 52%] Built target bitbang_cbus
Scanning dependencies of target bitbang_ft2232
Scanning dependencies of target eeprom
[ 57%] [ 63%] Building C object examples/CMakeFiles/eeprom.dir/eeprom.c.o
Building C object examples/CMakeFiles/bitbang_ft2232.dir/bitbang_ft2232.c.o
Linking C executable bitbang_ft2232
Linking C executable eeprom
[ 63%] Built target bitbang_ft2232
Scanning dependencies of target find_all
[ 68%] [ 68%] Built target eeprom
Building C object examples/CMakeFiles/find_all.dir/find_all.c.o
Scanning dependencies of target find_all_pp
Linking C executable find_all
[ 73%] [ 73%] Built target find_all
Building CXX object examples/CMakeFiles/find_all_pp.dir/find_all_pp.cpp.o
Scanning dependencies of target serial_test
[ 78%] Building C object examples/CMakeFiles/serial_test.dir/serial_test.c.o
Linking C executable serial_test
[ 78%] Built target serial_test
Scanning dependencies of target simple
[ 84%] Building C object examples/CMakeFiles/simple.dir/simple.c.o
Linking C executable simple
[ 84%] Built target simple
Linking CXX executable find_all_pp
Scanning dependencies of target stream_test
[ 89%] Building C object examples/CMakeFiles/stream_test.dir/stream_test.c.o
[ 89%] Built target find_all_pp
Scanning dependencies of target test_libftdi1
Linking C executable stream_test
[ 89%] Built target stream_test
[ 94%] [100%] Building CXX object test/CMakeFiles/test_libftdi1.dir/basic.cpp.o
Building CXX object test/CMakeFiles/test_libftdi1.dir/baudrate.cpp.o
In file included from 
/sw/src/fink.build/libftdi1-1.1-3/libftdi1-1.1/test/basic.cpp:17:
In file included from /sw/opt/boost-1_55/include/boost/test/unit_test.hpp:19:
In file included from /sw/opt/boost-1_55/include/boost/test/test_tools.hpp:21:
/sw/opt/boost-1_55/include/boost/test/floating_point_comparison.hpp:251:25: 
warning: 
      unused variable 'check_is_close' [-Wunused-variable]
check_is_close_t const& check_is_close =...
                        ^
/sw/opt/boost-1_55/include/boost/test/floating_point_comparison.hpp:273:25: 
warning: 
      unused variable 'check_is_small' [-Wunused-variable]
check_is_small_t const& check_is_small =...
                        ^
In file included from 
/sw/src/fink.build/libftdi1-1.1-3/libftdi1-1.1/test/baudrate.cpp:18:
In file included from /sw/opt/boost-1_55/include/boost/test/unit_test.hpp:19:
In file included from /sw/opt/boost-1_55/include/boost/test/test_tools.hpp:21:
/sw/opt/boost-1_55/include/boost/test/floating_point_comparison.hpp:251:25: 
warning: 
      unused variable 'check_is_close' [-Wunused-variable]
check_is_close_t const& check_is_close =...
                        ^
/sw/opt/boost-1_55/include/boost/test/floating_point_comparison.hpp:273:25: 
warning: 
      unused variable 'check_is_small' [-Wunused-variable]
check_is_small_t const& check_is_small =...
                        ^
2 warnings generated.
2 warnings generated.
Linking CXX executable test_libftdi1
[100%] Built target test_libftdi1
/bin/rm -rf /sw/src/fink.build/root-libftdi1-1.1-3
/bin/mkdir -p /sw/src/fink.build/root-libftdi1-1.1-3/sw
/bin/mkdir -p /sw/src/fink.build/root-libftdi1-1.1-3/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/src/fink.build/root-libftdi1-1.1-3
sudo -u fink-bld [ENV] sh -c /tmp/fink.sIVNM
/tmp/fink.fR4AK
#!/bin/sh -ev
  cd build
  make install DESTDIR=/sw/src/fink.build/root-libftdi1-1.1-3
[ 10%] Built target ftdi1
[ 21%] Built target ftdi1-static
[ 26%] Built target ftdipp1
[ 31%] Built target ftdipp1-static
[ 36%] Built target baud_test
[ 42%] Built target bitbang
[ 47%] Built target bitbang2
[ 52%] Built target bitbang_cbus
[ 57%] Built target bitbang_ft2232
[ 63%] Built target eeprom
[ 68%] Built target find_all
[ 73%] Built target find_all_pp
[ 78%] Built target serial_test
[ 84%] Built target simple
[ 89%] Built target stream_test
[100%] Built target test_libftdi1
Install the project...
-- Install configuration: "RelWithDebInfo"
-- Installing: 
/sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/pkgconfig/libftdi1.pc
-- Installing: 
/sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/pkgconfig/libftdipp1.pc
-- Installing: /sw/src/fink.build/root-libftdi1-1.1-3/sw/bin/libftdi1-config
-- Installing: 
/sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/cmake/libftdi1/LibFTDI1Config.cmake
-- Installing: 
/sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/cmake/libftdi1/UseLibFTDI1.cmake
-- Installing: 
/sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdi1.2.1.0.dylib
-- Installing: /sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdi1.2.dylib
-- Installing: /sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdi1.dylib
-- Installing: /sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdi1.a
-- Installing: /sw/src/fink.build/root-libftdi1-1.1-3/sw/include/libftdi1/ftdi.h
-- Installing: 
/sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdipp1.2.1.0.dylib
-- Installing: /sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdipp1.2.dylib
-- Installing: /sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdipp1.dylib
-- Installing: /sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdipp1.a
-- Installing: 
/sw/src/fink.build/root-libftdi1-1.1-3/sw/include/libftdi1/ftdi.hpp
  rm /sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdi1.2.dylib
  rm /sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdipp1.2.dylib
  mv /sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdi1.2.1.0.dylib   
/sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdi1.2.dylib
  mv /sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdipp1.2.1.0.dylib 
/sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdipp1.2.dylib
  install_name_tool  -id /sw/lib/libftdi1.2.dylib   
/sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdi1.2.dylib
  install_name_tool  -id /sw/lib/libftdipp1.2.dylib 
/sw/src/fink.build/root-libftdi1-1.1-3/sw/lib/libftdipp1.2.dylib
  mkdir -p /sw/src/fink.build/root-libftdi1-1.1-3/sw/share
  rm -f doc/man/man3/_*
  mv doc/man /sw/src/fink.build/root-libftdi1-1.1-3/sw/share
mv: rename doc/man to /sw/src/fink.build/root-libftdi1-1.1-3/sw/share/man: No 
such file or directory
### execution of /tmp/fink.fR4AK failed, exit code 1
### execution of /tmp/fink.sIVNM failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-libftdi1-1.1-3
(Reading database ... 85007 files and directories currently installed.)
Removing fink-buildlock-libftdi1-1.1-3 ...
Failed: phase installing: libftdi1-1.1-3 failed


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