Hello all,
I have a problem installing coot package on OSX 10.9. Any idea?
Best regards,
Adam
> fink install coot
...
gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/struct/soft/osx/fink-10.9/include/glib-2.0
-I/struct/soft/osx/fink-10.9/lib/glib-2.0/include
-I/struct/soft/osx/fink-10.9/include/gtkgl-2.0
-I/struct/soft/osx/fink-10.9/include/gtk-2.0
-I/struct/soft/osx/fink-10.9/lib/gtk-2.0/include
-I/struct/soft/osx/fink-10.9/include/gtk-2.0
-I/struct/soft/osx/fink-10.9/include/pango-1.0
-I/struct/soft/osx/fink-10.9/include/atk-1.0
-I/struct/soft/osx/fink-10.9/include/cairo
-I/struct/soft/osx/fink-10.9/include/pango-1.0
-I/struct/soft/osx/fink-10.9/include/freetype2
-I/struct/soft/osx/fink-10.9/include -I/opt/X11/include
-I/struct/soft/osx/fink-10.9/include -I/struct/soft/osx/fink-10.9/include
-D_THREAD_SAFE -MD -I/struct/soft/osx/fink-10.9/include -g -O2
-I/struct/soft/osx/fink-10.9/include/glib-2.0
-I/struct/soft/osx/fink-10.9/lib/glib-2.0/include
-I/struct/soft/osx/fink-10.9/include/gtk-2.0
-I/struct/soft/osx/fink-10.9/lib/gtk-2.0/include
-I/struct/soft/osx/fink-10.9/include/gtk-2.0 -I/struct/soft/osx/fink-1
0.9/include/pango-1.0 -I/struct/soft/osx/fink-10.9/include/atk-1.0
-I/struct/soft/osx/fink-10.9/include/cairo
-I/struct/soft/osx/fink-10.9/include/pango-1.0
-I/struct/soft/osx/fink-10.9/include/freetype2
-I/struct/soft/osx/fink-10.9/include -I/opt/X11/include -c gdk-gl-glue.c
-fno-common -DPIC -o .libs/gdk-gl-glue.o
gdk-gl-glue.c:86:21: error: use of undeclared identifier 'gdk_gl_context_ref'
(void *(*)(void*))gdk_gl_context_ref,
^
gdk-gl-glue.c:87:20: error: use of undeclared identifier 'gdk_gl_context_unref'
(void (*)(void*))gdk_gl_context_unref,
^
gdk-gl-glue.c:103:21: error: use of undeclared identifier 'gdk_gl_pixmap_ref'
(void *(*)(void*))gdk_gl_pixmap_ref,
^
gdk-gl-glue.c:104:20: error: use of undeclared identifier 'gdk_gl_pixmap_unref'
(void (*)(void*))gdk_gl_pixmap_unref,
^
gdk-gl-glue.c:251:14: warning: indirection of non-volatile null pointer will be
deleted, not trap [-Wnull-dereference]
c_direct = scm_is_true (p_direct);
^~~~~~~~~~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:35:26: note: expanded from
macro 'scm_is_true'
#define scm_is_true(x) !scm_is_false (x)
^~~~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:34:25: note: expanded from
macro 'scm_is_false'
#define scm_is_false(x) scm_is_eq ((x), SCM_BOOL_F)
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/tags.h:145:26: note: expanded from
macro 'scm_is_eq'
#define scm_is_eq(x, y) (SCM_UNPACK (x) == SCM_UNPACK (y))
^~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/tags.h:122:45: note: expanded from
macro 'SCM_UNPACK'
# define SCM_UNPACK(x) ((scm_t_bits) (0? (*(SCM*)0=(x)): x))
^~~~~~~~
gdk-gl-glue.c:251:14: note: consider using __builtin_trap() or qualifying
pointer with 'volatile'
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:35:26: note: expanded from
macro 'scm_is_true'
#define scm_is_true(x) !scm_is_false (x)
^
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:34:25: note: expanded from
macro 'scm_is_false'
#define scm_is_false(x) scm_is_eq ((x), SCM_BOOL_F)
^
/struct/soft/osx/fink-10.9/include/libguile/tags.h:145:26: note: expanded from
macro 'scm_is_eq'
#define scm_is_eq(x, y) (SCM_UNPACK (x) == SCM_UNPACK (y))
^
/struct/soft/osx/fink-10.9/include/libguile/tags.h:122:45: note: expanded from
macro 'SCM_UNPACK'
# define SCM_UNPACK(x) ((scm_t_bits) (0? (*(SCM*)0=(x)): x))
^
gdk-gl-glue.c:251:14: warning: indirection of non-volatile null pointer will be
deleted, not trap [-Wnull-dereference]
c_direct = scm_is_true (p_direct);
^~~~~~~~~~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:35:26: note: expanded from
macro 'scm_is_true'
#define scm_is_true(x) !scm_is_false (x)
^~~~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:34:25: note: expanded from
macro 'scm_is_false'
#define scm_is_false(x) scm_is_eq ((x), SCM_BOOL_F)
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/tags.h:145:44: note: expanded from
macro 'scm_is_eq'
#define scm_is_eq(x, y) (SCM_UNPACK (x) == SCM_UNPACK (y))
^~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/tags.h:122:45: note: expanded from
macro 'SCM_UNPACK'
# define SCM_UNPACK(x) ((scm_t_bits) (0? (*(SCM*)0=(x)): x))
^~~~~~~~
gdk-gl-glue.c:251:14: note: consider using __builtin_trap() or qualifying
pointer with 'volatile'
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:35:26: note: expanded from
macro 'scm_is_true'
#define scm_is_true(x) !scm_is_false (x)
^
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:34:25: note: expanded from
macro 'scm_is_false'
#define scm_is_false(x) scm_is_eq ((x), SCM_BOOL_F)
^
/struct/soft/osx/fink-10.9/include/libguile/tags.h:145:44: note: expanded from
macro 'scm_is_eq'
#define scm_is_eq(x, y) (SCM_UNPACK (x) == SCM_UNPACK (y))
^
/struct/soft/osx/fink-10.9/include/libguile/tags.h:122:45: note: expanded from
macro 'SCM_UNPACK'
# define SCM_UNPACK(x) ((scm_t_bits) (0? (*(SCM*)0=(x)): x))
^
gdk-gl-glue.c:271:14: warning: indirection of non-volatile null pointer will be
deleted, not trap [-Wnull-dereference]
c_direct = scm_is_true (p_direct);
^~~~~~~~~~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:35:26: note: expanded from
macro 'scm_is_true'
#define scm_is_true(x) !scm_is_false (x)
^~~~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:34:25: note: expanded from
macro 'scm_is_false'
#define scm_is_false(x) scm_is_eq ((x), SCM_BOOL_F)
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/tags.h:145:26: note: expanded from
macro 'scm_is_eq'
#define scm_is_eq(x, y) (SCM_UNPACK (x) == SCM_UNPACK (y))
^~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/tags.h:122:45: note: expanded from
macro 'SCM_UNPACK'
# define SCM_UNPACK(x) ((scm_t_bits) (0? (*(SCM*)0=(x)): x))
^~~~~~~~
gdk-gl-glue.c:271:14: note: consider using __builtin_trap() or qualifying
pointer with 'volatile'
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:35:26: note: expanded from
macro 'scm_is_true'
#define scm_is_true(x) !scm_is_false (x)
^
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:34:25: note: expanded from
macro 'scm_is_false'
#define scm_is_false(x) scm_is_eq ((x), SCM_BOOL_F)
^
/struct/soft/osx/fink-10.9/include/libguile/tags.h:145:26: note: expanded from
macro 'scm_is_eq'
#define scm_is_eq(x, y) (SCM_UNPACK (x) == SCM_UNPACK (y))
^
/struct/soft/osx/fink-10.9/include/libguile/tags.h:122:45: note: expanded from
macro 'SCM_UNPACK'
# define SCM_UNPACK(x) ((scm_t_bits) (0? (*(SCM*)0=(x)): x))
^
gdk-gl-glue.c:271:14: warning: indirection of non-volatile null pointer will be
deleted, not trap [-Wnull-dereference]
c_direct = scm_is_true (p_direct);
^~~~~~~~~~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:35:26: note: expanded from
macro 'scm_is_true'
#define scm_is_true(x) !scm_is_false (x)
^~~~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:34:25: note: expanded from
macro 'scm_is_false'
#define scm_is_false(x) scm_is_eq ((x), SCM_BOOL_F)
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/tags.h:145:44: note: expanded from
macro 'scm_is_eq'
#define scm_is_eq(x, y) (SCM_UNPACK (x) == SCM_UNPACK (y))
^~~~~~~~~~~~~~
/struct/soft/osx/fink-10.9/include/libguile/tags.h:122:45: note: expanded from
macro 'SCM_UNPACK'
# define SCM_UNPACK(x) ((scm_t_bits) (0? (*(SCM*)0=(x)): x))
^~~~~~~~
gdk-gl-glue.c:271:14: note: consider using __builtin_trap() or qualifying
pointer with 'volatile'
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:35:26: note: expanded from
macro 'scm_is_true'
#define scm_is_true(x) !scm_is_false (x)
^
/struct/soft/osx/fink-10.9/include/libguile/boolean.h:34:25: note: expanded from
macro 'scm_is_false'
#define scm_is_false(x) scm_is_eq ((x), SCM_BOOL_F)
^
/struct/soft/osx/fink-10.9/include/libguile/tags.h:145:44: note: expanded from
macro 'scm_is_eq'
#define scm_is_eq(x, y) (SCM_UNPACK (x) == SCM_UNPACK (y))
^
/struct/soft/osx/fink-10.9/include/libguile/tags.h:122:45: note: expanded from
macro 'SCM_UNPACK'
# define SCM_UNPACK(x) ((scm_t_bits) (0? (*(SCM*)0=(x)): x))
^
4 warnings and 4 errors generated.
Makefile:332: recipe for target 'gdk-gl-glue.lo' failed
make[3]: *** [gdk-gl-glue.lo] Error 1
make[3]: Leaving directory
'/struct/soft/osx/fink-10.9/src/fink.build/guile18-gtk-2.1-19/guile-gtk-2.1/gtk-gl'
Makefile:246: recipe for target 'all' failed
make[2]: *** [all] Error 2
make[2]: Leaving directory
'/struct/soft/osx/fink-10.9/src/fink.build/guile18-gtk-2.1-19/guile-gtk-2.1/gtk-gl'
Makefile:707: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
'/struct/soft/osx/fink-10.9/src/fink.build/guile18-gtk-2.1-19/guile-gtk-2.1'
Makefile:325: recipe for target 'all' failed
make: *** [all] Error 2
### execution of /tmp/fink.mW8uc failed, exit code 2
### execution of /tmp/fink.gbmfO failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/struct/soft/osx/fink-10.9/bin/dpkg-lockwait -r
fink-buildlock-guile18-gtk-2.1-19
(Reading database ... 255138 files and directories currently installed.)
Removing fink-buildlock-guile18-gtk-2.1-19 ...
Failed: phase compiling: guile18-gtk-2.1-19 failed
Before reporting any errors, please run "fink selfupdate" and try again.
If you continue to have issues, please check to see if the FAQ on Fink's
website solves the problem. If not, ask on one (not both, please) of
these mailing lists:
The Fink Users List <fink-users@lists.sourceforge.net>
The Fink Beginners List <fink-beginn...@lists.sourceforge.net>,
with a carbon copy to the maintainer:
W. G. Scott <wgsc...@users.sourceforge.net>
Note that this is preferable to emailing just the maintainer directly,
since most fink package maintainers do not have access to all possible
hardware and software configurations.
Please try to include the complete error message in your report. This
generally consists of a compiler line starting with e.g. "gcc" or "g++"
followed by the actual error output from the compiler.
Also include the following system information:
Package manager version: 0.38.7
Distribution version: selfupdate-rsync Wed Sep 23 12:32:57 2015, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 6.2
Xcode command-line tools: 6.2.0.0.1.1424975374
guile18-gtk-2.1-19 is set to build with only one job.
bash-3.2#
bash-3.2# /struct/soft/osx/fink-10.9/bin/fink selfupdate
/usr/bin/rsync -az -q
rsync://distfiles.master.finkmirrors.net/finkinfo//TIMESTAMP
/struct/soft/osx/fink-10.9/fink/TIMESTAMP.tmp
I will now run the rsync command to retrieve the latest package descriptions.
/usr/bin/su mazur -c "/usr/bin/rsync -rtz --delete-after --delete -q
--include='10.7/' --include='10.7/stable/' --include='10.7/stable/main/'
--include='10.7/stable/main/finkinfo/' --include='10.7/stable/main/finkinfo/*/'
--include='10.7/stable/main/finkinfo/*'
--include='10.7/stable/main/finkinfo/**/*' --include='VERSION'
--include='DISTRIBUTION' --include='README' --exclude='**'
'rsync://distfiles.master.finkmirrors.net/finkinfo'
'/struct/soft/osx/fink-10.9/fink/'"
Scanning package description files..........
Information about 12134 packages read in 7 seconds.
No packages to install.
The core packages have been updated. You should now update the other packages
using commands like 'fink update-all'.
bash-3.2# /struct/soft/osx/fink-10.9/bin/fink list coot
Information about 12134 packages read in 1 seconds.
coot 0.8.2-2 Crystallographic molecular graphics
coot-dev 0.8.2-2 Crystallographic molecular graphics
coot-shlibs 0.8.2-2 Crystallographic molecular graphics
bash-3.2# /struct/soft/osx/fink-10.9/bin/fink update-all
Information about 12134 packages read in 0 seconds.
No packages to install.
bash-3.2#
------------------------------------------------------------------------------
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