On 4 Oct 2015, at 19:32, Alexander Hansen <alexanderk.han...@gmail.com> wrote: > >> On Oct 4, 2015, at 09:37, Viv Kendon <v...@trellick.org> wrote: >> >> Having trouble unpacking openmpi: >> >> /sw/bin/dpkg-lockwait -i >> /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/openmpi_1.10.0-1_darwin-x86_64.deb >> (Reading database ... 380816 files and directories currently installed.) >> Preparing to replace openmpi 1.10.0-1 (using >> .../openmpi_1.10.0-1_darwin-x86_64.deb) ... >> Unpacking replacement openmpi ... >> Setting up openmpi (1.10.0-1) ... >> Clearing dependency_libs of .la files being installed >> ln: /sw/bin/vtCC: File exists >> /sw/bin/dpkg: error processing openmpi (--install): >> subprocess post-installation script returned error exit status 1 >> Errors were encountered while processing: >> openmpi >> >> It didn’t give me a “please include this” set of info, let me know if I left >> out anything you need about my configuration: 10.9.5, case-sensitive, fink >> -V >> Package manager version: 0.39.1 >> >> fink list -t openmpi >> Information about 9257 packages read in 0 seconds. >> openmpi 1.10.0-1 MPI implementation for parallel computing >> i openmpi-shlibs 1.10.0-1 Shared libraries for openmpi package >> >> gcc -v >> Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr >> --with-gxx-include-dir=/usr/include/c++/4.2.1 >> Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn) >> Target: x86_64-apple-darwin13.4.0 >> >> ls -l /sw/bin/vt* >> 8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtCC@ -> vtwrapper >> 8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtc++@ -> vtwrapper >> 8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtcxx@ -> vtwrapper >> 8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtf77@ -> vtwrapper >> 8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtf90@ -> vtwrapper >> 624 -rwxr-xr-x 1 root admin 318760 Oct 4 14:53 /sw/bin/vtfilter* >> 664 -rwxr-xr-x 1 root admin 336860 Oct 4 14:53 /sw/bin/vtfilter-mpi* >> 8 lrwxr-xr-x 1 root admin 8 Oct 4 15:56 /sw/bin/vtfiltergen@ -> >> vtfilter >> 8 lrwxr-xr-x 1 root admin 12 Oct 4 15:56 /sw/bin/vtfiltergen-mpi@ >> -> vtfilter-mpi >> 8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtfort@ -> >> vtwrapper >> 24 -rwxr-xr-x 1 root admin 9205 Oct 4 14:53 /sw/bin/vtrun* >> 8 -rwxr-xr-x 1 root admin 1612 Oct 4 14:53 /sw/bin/vtsetup* >> 1096 -rw-r--r-- 1 root admin 557402 Oct 4 14:53 /sw/bin/vtsetup.jar >> 1104 -rwxr-xr-x 1 root admin 563296 Oct 4 14:53 /sw/bin/vtunify* >> 1272 -rwxr-xr-x 1 root admin 649392 Oct 4 14:53 /sw/bin/vtunify-mpi* >> 328 -rwxr-xr-x 1 root admin 166016 Oct 4 14:53 /sw/bin/vtwrapper* >> >> (the 14:53 timestamps are from when I tried it first, and openmpi-shlibs was >> installed successfully; 15:56 is when it failed the second time, after >> restarting “update-all") >> >> many thanks, >> — Viv >> ——————————————————————————————————————— > > There’s a note in the packaging about “case sensitive hackery”, but it > appears not to have taken effect. It looks like vtCC still gets installed, > and then the PostInstScript tries to run > > ln -s /sw/bin/vtwrapper /sw/bin/vtCC > > which fails due to vtCC already existing. > > Since I don’t have a case-sensisitve system handy, could I please get you to > do a “fink -kK rebuild openmpi” ? That way I can do some forensics on the > build and root directories to see whether the scripts are doing the right > thing? > > The first thing to look for is the output of "ls > /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vt* > done:
ls /sw/src/fink.build/root-openmpi-1.10.0-1/sw 8 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtc++@ 8 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtcc@ 8 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtcxx@ 8 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtf77@ 8 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtf90@ 624 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtfilter* 664 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtfilter-mpi* 8 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtfiltergen@ 8 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtfiltergen-mpi@ 8 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtfort@ 24 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtrun* 8 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtsetup* 1096 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtsetup.jar 1104 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtunify* 1272 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtunify-mpi* 328 /sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vtwrapper* note that despite the “rebuild” it reinstalled openmpi-shlibs, so I now have ls -l /sw/bin/vt* 8 lrwxr-xr-x 1 root admin 9 Oct 4 18:02 /sw/bin/vtCC@ -> vtwrapper 8 lrwxr-xr-x 1 root admin 9 Oct 4 18:02 /sw/bin/vtc++@ -> vtwrapper 8 lrwxr-xr-x 1 root admin 9 Oct 4 18:02 /sw/bin/vtcxx@ -> vtwrapper 8 lrwxr-xr-x 1 root admin 9 Oct 4 18:02 /sw/bin/vtf77@ -> vtwrapper 8 lrwxr-xr-x 1 root admin 9 Oct 4 18:02 /sw/bin/vtf90@ -> vtwrapper 624 -rwxr-xr-x 1 root admin 318760 Oct 4 14:53 /sw/bin/vtfilter* 664 -rwxr-xr-x 1 root admin 336860 Oct 4 14:53 /sw/bin/vtfilter-mpi* 8 lrwxr-xr-x 1 root admin 8 Oct 4 18:02 /sw/bin/vtfiltergen@ -> vtfilter 8 lrwxr-xr-x 1 root admin 12 Oct 4 18:02 /sw/bin/vtfiltergen-mpi@ -> vtfilter-mpi 8 lrwxr-xr-x 1 root admin 9 Oct 4 18:02 /sw/bin/vtfort@ -> vtwrapper 24 -rwxr-xr-x 1 root admin 9205 Oct 4 14:53 /sw/bin/vtrun* 8 -rwxr-xr-x 1 root admin 1612 Oct 4 14:53 /sw/bin/vtsetup* 1096 -rw-r--r-- 1 root admin 557402 Oct 4 14:53 /sw/bin/vtsetup.jar 1104 -rwxr-xr-x 1 root admin 563296 Oct 4 14:53 /sw/bin/vtunify* 1272 -rwxr-xr-x 1 root admin 649392 Oct 4 14:53 /sw/bin/vtunify-mpi* 328 -rwxr-xr-x 1 root admin 166016 Oct 4 14:53 /sw/bin/vtwrapper* note later timestamps. many thanks, — Viv ------------------------------------------------------------------------------ _______________________________________________ Fink-users mailing list Fink-users@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
