> On Oct 19, 2015, at 10:42, Andrea Cavalli <andrea.cava...@irb.usi.ch> wrote: > > fink update-all fails with openmpi with the error below (Xcode 7.1, Tools > 7.1). Any help? > > /sw/bin/flag-sort: /usr/bin/clang -DHAVE_CONFIG_H -DOMPI_PROFILING_DEFINES=1 > -O3 -DNDEBUG -fno-strict-aliasing -MT pinfo_set.lo -MD -MP -MF > .deps/pinfo_set.Tpo -c pinfo_set.c -fno-common -DPIC -o .libs/pinfo_set.o -I. > -I../../../../opal/include -I../../../../orte/include > -I../../../../ompi/include -I../../../../oshmem/include > -I../../../../opal/mca/hwloc/hwloc191/hwloc/include/private/autogen > -I../../../../opal/mca/hwloc/hwloc191/hwloc/include/hwloc/autogen > -I../../../.. > -I/sw/src/fink.build/openmpi-1.10.0-1/openmpi-1.10.0/opal/mca/event/libevent2021/libevent > > -I/sw/src/fink.build/openmpi-1.10.0-1/openmpi-1.10.0/opal/mca/event/libevent2021/libevent/include > -I/sw/include > CC pinit.lo > Makefile:2522: recipe for target 'all-recursive' failed > make[2]: *** [all-recursive] Error 1 > make[2]: Leaving directory > '/sw/src/fink.build/openmpi-1.10.0-1/openmpi-1.10.0/ompi/mpi/c' > Makefile:3140: recipe for target 'all-recursive' failed > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory > '/sw/src/fink.build/openmpi-1.10.0-1/openmpi-1.10.0/ompi' > Makefile:1698: recipe for target 'all-recursive' failed > make: *** [all-recursive] Error 1 > make: INTERNAL: Exiting with 1 jobserver tokens available; should be 8! > ### execution of /tmp/fink.tyJnK failed, exit code 2 > ### execution of /tmp/fink.DYIGu failed, exit code 2 > Removing runtime build-lock... > Removing build-lock package... > /sw/bin/dpkg-lockwait -r fink-buildlock-openmpi-1.10.0-1 > /sw/bin/flag-sort: /usr/bin/clang -DHAVE_CONFIG_H -DOMPI_PROFILING_DEFINES=1 > -O3 -DNDEBUG -fno-strict-aliasing -MT pinit.lo -MD -MP -MF .deps/pinit.Tpo -c > pinit.c -fno-common -DPIC -o .libs/pinit.o -I. -I../../../../opal/include > -I../../../../orte/include -I../../../../ompi/include > -I../../../../oshmem/include > -I../../../../opal/mca/hwloc/hwloc191/hwloc/include/private/autogen > -I../../../../opal/mca/hwloc/hwloc191/hwloc/include/hwloc/autogen > -I../../../.. > -I/sw/src/fink.build/openmpi-1.10.0-1/openmpi-1.10.0/opal/mca/event/libevent2021/libevent > > -I/sw/src/fink.build/openmpi-1.10.0-1/openmpi-1.10.0/opal/mca/event/libevent2021/libevent/include > -I/sw/include > (Reading database ... 246805 files and directories currently installed.) > Removing fink-buildlock-openmpi-1.10.0-1 ... > Failed: phase compiling: openmpi-1.10.0-1 failed > > > > > ------------------------------------------------------- > Dr. Andrea Cavalli > Institute for Research in Biomedicine > Via Vincenzo Vela 6 > CH-6500 Bellinzona > > Department of Chemistry > University of Cambridge > Lansfield Road > Cambridge, CB2 1EW, UK > > Email: andrea.cava...@irb.usi.ch <mailto:andrea.cava...@irb.usi.ch> > am...@cam.ac.uk <mailto:am...@cam.ac.uk> > > Phone: +41 (0)91 820 0303 > > http://www.open-almost.org <http://www.open-almost.org/> > >
It looks like you’re using Fink’s make. Try using “fink remove make” and then do your build again. -- Alexander Hansen, Ph.D. Fink User Liaison
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