Hi Alex, Many thanks for taking care of this so promptly.
Just tried a fink -k install numeric-py27 to get the source version. It’s no longer failing on the vecLib part, but now it wants cblas! I’m running xcode 7.1 on OS X 10.11.1. Selected parts of the output is below. All the best, and many thanks, —Buz > On Nov 1, 2015, at 8:20 PM, Alexander Hansen <[email protected] > <mailto:[email protected]>> wrote: > > >> On Nov 1, 2015, at 17:01, Buz Barstow <[email protected] >> <mailto:[email protected]>> wrote: >> >> Hi Alex, >> >> I think you are doing something… >> >> Running self update on fink causes it to hang at apt-get-lockwait: >> >> apollo8:matplotlib buz$ fink selfupdate >> Password: >> /usr/bin/rsync -az -q >> rsync://distfiles.master.finkmirrors.net/finkinfo//TIMESTAMP >> <rsync://distfiles.master.finkmirrors.net/finkinfo//TIMESTAMP> >> /sw/fink/TIMESTAMP.tmp >> I will now run the rsync command to retrieve the latest package >> descriptions. >> /usr/bin/rsync -rtz --delete-after --delete -q --include='10.9-libcxx/' >> --include='10.9-libcxx/stable/' --include='10.9-libcxx/stable/main/' >> --include='10.9-libcxx/stable/main/finkinfo/' >> --include='10.9-libcxx/stable/main/finkinfo/*/' >> --include='10.9-libcxx/stable/main/finkinfo/*' >> --include='10.9-libcxx/stable/main/finkinfo/**/*' --include='VERSION' >> --include='DISTRIBUTION' --include='README' --exclude='**' >> 'rsync://distfiles.master.finkmirrors.net/finkinfo' >> <rsync://distfiles.master.finkmirrors.net/finkinfo'> '/sw/fink/' >> Downloading the indexes of available packages in the binary distribution. >> /sw/bin/apt-get-lockwait -q update >> >> >> All the best, and thanks again! >> >> —Buz >> > > This has absolutely nothing to do with anything that I’ve done. What you > download via apt-get(-lockwait) are precompiled binary packages. I updated a > package description on the CVS server. > > Go ahead and hit Control-c and then see if you received the updated numeric; > though the output above suggests that it may not have migrated to rsync just > yet. > > -- > Alexander Hansen, Ph.D. > Fink User Liaison > apollo8:matplotlib buz$ fink -k install numeric-py27 Password: Information about 8806 packages read in 1 seconds. The following package will be installed or updated: numeric-py27 Setting runtime build-lock… ….. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/sw/include/python2.7 -c Src/ranlibmodule.c -o build/temp.macosx-10.11-x86_64-2.7/Src/ranlibmodule.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/sw/include/python2.7 -c Src/ranlib.c -o build/temp.macosx-10.11-x86_64-2.7/Src/ranlib.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/sw/include/python2.7 -c Src/com.c -o build/temp.macosx-10.11-x86_64-2.7/Src/com.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/sw/include/python2.7 -c Src/linpack.c -o build/temp.macosx-10.11-x86_64-2.7/Src/linpack.o gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.11-x86_64-2.7/Src/ranlibmodule.o build/temp.macosx-10.11-x86_64-2.7/Src/ranlib.o build/temp.macosx-10.11-x86_64-2.7/Src/com.o build/temp.macosx-10.11-x86_64-2.7/Src/linpack.o -L/sw/lib -o build/lib.macosx-10.11-x86_64-2.7/ranlib.so building 'lapack_lite' extension gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/sw/include/python2.7 -c Src/lapack_litemodule.c -o build/temp.macosx-10.11-x86_64-2.7/Src/lapack_litemodule.o gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.11-x86_64-2.7/Src/lapack_litemodule.o -L/sw/lib -o build/lib.macosx-10.11-x86_64-2.7/lapack_lite.so -framework Accelerate building 'FFT.fftpack' extension creating build/temp.macosx-10.11-x86_64-2.7/Packages creating build/temp.macosx-10.11-x86_64-2.7/Packages/FFT creating build/temp.macosx-10.11-x86_64-2.7/Packages/FFT/Src gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/sw/include/python2.7 -c Packages/FFT/Src/fftpackmodule.c -o build/temp.macosx-10.11-x86_64-2.7/Packages/FFT/Src/fftpackmodule.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/sw/include/python2.7 -c Packages/FFT/Src/fftpack.c -o build/temp.macosx-10.11-x86_64-2.7/Packages/FFT/Src/fftpack.o gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.11-x86_64-2.7/Packages/FFT/Src/fftpackmodule.o build/temp.macosx-10.11-x86_64-2.7/Packages/FFT/Src/fftpack.o -L/sw/lib -o build/lib.macosx-10.11-x86_64-2.7/FFT/fftpack.so building 'RNG.RNG' extension creating build/temp.macosx-10.11-x86_64-2.7/Packages/RNG creating build/temp.macosx-10.11-x86_64-2.7/Packages/RNG/Src gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/sw/include/python2.7 -c Packages/RNG/Src/RNGmodule.c -o build/temp.macosx-10.11-x86_64-2.7/Packages/RNG/Src/RNGmodule.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/sw/include/python2.7 -c Packages/RNG/Src/ranf.c -o build/temp.macosx-10.11-x86_64-2.7/Packages/RNG/Src/ranf.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/sw/include/python2.7 -c Packages/RNG/Src/pmath_rng.c -o build/temp.macosx-10.11-x86_64-2.7/Packages/RNG/Src/pmath_rng.o gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.11-x86_64-2.7/Packages/RNG/Src/RNGmodule.o build/temp.macosx-10.11-x86_64-2.7/Packages/RNG/Src/ranf.o build/temp.macosx-10.11-x86_64-2.7/Packages/RNG/Src/pmath_rng.o -L/sw/lib -o build/lib.macosx-10.11-x86_64-2.7/RNG/RNG.so building '_dotblas' extension creating build/temp.macosx-10.11-x86_64-2.7/Packages/dotblas creating build/temp.macosx-10.11-x86_64-2.7/Packages/dotblas/dotblas gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -DCBLAS_HEADER=<cblas.h> -I/System/Library/Frameworks/Accelerate.framework/Headers -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/sw/include/python2.7 -c Packages/dotblas/dotblas/_dotblas.c -o build/temp.macosx-10.11-x86_64-2.7/Packages/dotblas/dotblas/_dotblas.o Packages/dotblas/dotblas/_dotblas.c:10:10: fatal error: 'cblas.h' file not found #include CBLAS_HEADER ^ <command line>:2:22: note: expanded from here #define CBLAS_HEADER <cblas.h> ^ 1 error generated. error: command 'gcc' failed with exit status 1 ### execution of /sw/bin/python2.7 failed, exit code 1 ### execution of /tmp/fink.P4Nvp failed, exit code 1 Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-numeric-py27-24.2-4 (Reading database ... 201907 files and directories currently installed.) Removing fink-buildlock-numeric-py27-24.2-4 ... Failed: phase compiling: numeric-py27-24.2-4 failed Before reporting any errors, please run "fink selfupdate" and try again. Also try using "fink configure" to set your maximum build jobs to 1 and attempt to build the package again. If you continue to have issues, please check to see if the FAQ on Fink's website solves the problem. If not, ask on one (not both, please) of these mailing lists: The Fink Users List <[email protected] <mailto:[email protected]>> The Fink Beginners List <[email protected] <mailto:[email protected]>>. Please try to include the complete error message in your report. This generally consists of a compiler line starting with e.g. "gcc" or "g++" followed by the actual error output from the compiler. Also include the following system information: Package manager version: 0.39.2 Distribution version: selfupdate-rsync Sun Nov 1 20:32:58 2015, 10.11, x86_64 Trees: local/main stable/main Xcode.app: 7.1 Xcode command-line tools: 7.1.0.0.1.1444952191 Max. Fink build jobs: 8
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