It looks like 'recvobj' was removed from mpi4py about two years ago: https://bitbucket.org/mpi4py/mpi4py/commits/3d8503a11d320dd1c3030ec0dbce95f63b0ba602
but I'm not sure when it made it into the released version. It looks like you can safely edit fipy/tools/comms/mpi4pyCommWrapper.py to remove the 'recvobj' argument. We'll do some tests and push a fix as soon as possible. Thanks for alerting us to the issue. Filed as https://github.com/usnistgov/fipy/issues/491 > On Apr 27, 2016, at 2:23 PM, Kris Kuhlman <kristopher.kuhl...@gmail.com> > wrote: > > I built the trilinos-capable version of fipy. It seems to work for serial > (even for a non-trivial case), but I am getting errors with more than one > processor with a simple call to globalValue(), which I was trying to use to > make a plot by gathering the results to procID==0 > > I used the latest git version of mpi4py and trilinos. Am I doing something > wrong (is there a different preferred way to gather things to a single > processor to save or make plots?) or do I need to use a specific version of > these packages and rebuild? It seems the function is expecting something > with a different interface or call structure. > > Kris > > python test.py > hello from 0 out of 1 [ 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1.] > > `--> ~/local/trilinos-fipy/anaconda/bin/mpirun -np 1 python test.py > hello from 0 out of 1 [ 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. > 1. 1.] > > --> ~/local/trilinos-fipy/anaconda/bin/mpirun -np 2 python test.py > hello from 1 out of 2 > Traceback (most recent call last): > File "test.py", line 6, in <module> > print 'hello from',fp.tools.parallel.procID,'out > of',fp.tools.parallel.Nproc,p.globalValue > File > "/home/klkuhlm/local/trilinos-fipy/anaconda/lib/python2.7/site-packages/fipy/variables/cellVariable.py", > line 163, in globalValue > self.mesh._globalNonOverlappingCellIDs) > File > "/home/klkuhlm/local/trilinos-fipy/anaconda/lib/python2.7/site-packages/fipy/variables/meshVariable.py", > line 171, in _getGlobalValue > globalIDs = > numerix.concatenate(self.mesh.communicator.allgather(globalIDs)) > File > "/home/klkuhlm/local/trilinos-fipy/anaconda/lib/python2.7/site-packages/fipy/tools/comms/mpi4pyCommWrapper.py", > line 75, in allgather > return self.mpi4py_comm.allgather(sendobj=sendobj, recvobj=recvobj) > File "MPI/Comm.pyx", line 1288, in mpi4py.MPI.Comm.allgather > (src/mpi4py.MPI.c:109141) > TypeError: allgather() got an unexpected keyword argument 'recvobj' > hello from 0 out of 2 > Traceback (most recent call last): > File "test.py", line 6, in <module> > print 'hello from',fp.tools.parallel.procID,'out > of',fp.tools.parallel.Nproc,p.globalValue > File > "/home/klkuhlm/local/trilinos-fipy/anaconda/lib/python2.7/site-packages/fipy/variables/cellVariable.py", > line 163, in globalValue > self.mesh._globalNonOverlappingCellIDs) > File > "/home/klkuhlm/local/trilinos-fipy/anaconda/lib/python2.7/site-packages/fipy/variables/meshVariable.py", > line 171, in _getGlobalValue > globalIDs = > numerix.concatenate(self.mesh.communicator.allgather(globalIDs)) > File > "/home/klkuhlm/local/trilinos-fipy/anaconda/lib/python2.7/site-packages/fipy/tools/comms/mpi4pyCommWrapper.py", > line 75, in allgather > return self.mpi4py_comm.allgather(sendobj=sendobj, recvobj=recvobj) > File "MPI/Comm.pyx", line 1288, in mpi4py.MPI.Comm.allgather > (src/mpi4py.MPI.c:109141) > TypeError: allgather() got an unexpected keyword argument 'recvobj' > ------------------------------------------------------- > Primary job terminated normally, but 1 process returned > a non-zero exit code.. Per user-direction, the job has been aborted. > ------------------------------------------------------- > -------------------------------------------------------------------------- > mpirun detected that one or more processes exited with non-zero status, thus > causing > the job to be terminated. The first process to do so was: > > Process name: [[1719,1],1] > Exit code: 1 > -------------------------------------------------------------------------- > > <test.py>_______________________________________________ > fipy mailing list > fipy@nist.gov > http://www.ctcms.nist.gov/fipy > [ NIST internal ONLY: https://email.nist.gov/mailman/listinfo/fipy ] _______________________________________________ fipy mailing list fipy@nist.gov http://www.ctcms.nist.gov/fipy [ NIST internal ONLY: https://email.nist.gov/mailman/listinfo/fipy ]
