RE: Fis Digest Vol 24, Issue 39. Kauffman: Every idea is real and alive. Platonism asserts this directly in the belief in the existence of form and this form is a living form that we interact with and we are. How these notions are related to QM probably does await the emergence of a deeper QM.
ME: The information states that I have discovered, and am proposing for a theory of information-in-experience seem to shed some nice light on the idea of 'the emergence of a deeper QM', which can support, 'a living form that we can interact with, and (which) we are.' The information states, represented by <======*O*, include a singular, irreducible set of information vectors <=======, which contain a potentially rich and complex catastrophe singularity, i.e. a form, which we can use to cognize information in the outside world, AND WHICH, amazingly for this discussion, does seem to act as a potential source of analytic, non-singular quantum wave functions, in the (mathematical) 'space' surrounding surrounding the form, in the same way that in complex analysis, analytic functions may be seen to originate in the singularities (poles and cuts) at specific locations in the complex plane. In this sense, every human mind becomes, 'a living form that we interact with and (which) we are.' Best wishes, Alex On 30 March 2016 at 04:37, <fis-requ...@listas.unizar.es> wrote: > Send Fis mailing list submissions to > fis@listas.unizar.es > > To subscribe or unsubscribe via the World Wide Web, visit > http://listas.unizar.es/cgi-bin/mailman/listinfo/fis > or, via email, send a message with subject or body 'help' to > fis-requ...@listas.unizar.es > > You can reach the person managing the list at > fis-ow...@listas.unizar.es > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Fis digest..." > > > Today's Topics: > > 1. _ Re: _ Re: _ Re: _ Re: On mathematical theories and models > in biology (Robert E. Ulanowicz) > 2. Re: _ Re: _ Re: _ Re: On mathematical theories and models in > biology (Guy A Hoelzer) > 3. _ Re: _ Re: _ Re: _ Re: On mathematical theories and models > in biology (Dr. Plamen L. Simeonov) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Tue, 29 Mar 2016 18:39:24 -0400 > From: "Robert E. Ulanowicz" <u...@umces.edu> > To: "Guy A Hoelzer" <hoel...@unr.edu> > Cc: Foundations of Information Science Information Science > <fis@listas.unizar.es> > Subject: [Fis] _ Re: _ Re: _ Re: _ Re: On mathematical theories and > models in biology > Message-ID: > <9f98669e818d7b5b6dddd6b4d9acb5f0.squir...@mail.cbl.umces.edu> > Content-Type: text/plain;charset=iso-8859-1 > > Dear Guy, > > Please allow me to respond to your invitation to Terry with my two cents. > > My triad for supporting the dynamics of life is a bit different. I see the > three essential fundamentals as: > > 1. Aleatoricism > > 2. Feedback > > 3. Memory > > Just to briefly elaborate on each: > > 1. I use aleatoricism to avoid the baggage associated with the term > "chance", which most immediately associate with "blind" chance. The > aleatoric spans the spectrum from unique events to blind chance to > conditional chance to propensities to just short of determinism. > > 2. More specifically (and in parallel with autopoesis) I focus on > autocatalytic feedback, which exhibits the property of "centripetality". > Centripetality appears on almost no one's list of properties of life, > despite its ubiquity in association with living systems. > > 3. Memory (and information) likely inhered in stable configurations of > processes (metabolism) well before the advent of molecular encoding. Terry > speaks to this point in Biological Theory 1(2):136-49. > > My fundamentals do not include reproduction, because I see reproduction as > corollary to 2 & 3. > > I propose a full metaphysics for life predicated on these three > assumptions. > <http://people.clas.ufl.edu/ulan/publications/philosophy/3rdwindow/> > > Looking forward to what others see as fundamental. > > Peace, > Bob > > > > I personally consider metabolism to be at the core of what constitutes > > ???life???, so the notion of autopoeisis is very attractive to me. It is > > also possible that the richness of life as we know it depends on having > > metabolisms (activity), genomes (memory), and reproduction combined. The > > reductionistic approach to singling out one of these three pillars of > life > > as its essence may be futile. However, I want to point out that the most > > reduced version of ???life??? I have seen was proposed by Terry Deacon in > > the concept he calls ???autocells???. Terry has made great contributions > > to FIS dealing with related topics, and I hope he will chime in here to > > describe his minimalist form of life, which is not cellular, does not > have > > any metabolism or genetically encoded memory. Autocells do, however, > > reproduce. > > > > Regards, > > > > Guy > > > > > ------------------------------ > > Message: 2 > Date: Tue, 29 Mar 2016 23:00:55 +0000 > From: Guy A Hoelzer <hoel...@unr.edu> > To: Robert Ulanowicz <u...@umces.edu> > Cc: Foundations of Information Science Information Science > <fis@listas.unizar.es> > Subject: Re: [Fis] _ Re: _ Re: _ Re: On mathematical theories and > models in biology > Message-ID: <84908547-e162-4ab1-9458-135546c73...@unr.edu> > Content-Type: text/plain; charset="utf-8" > > Hi Robert, > > I haven?t read your book yet, but thanks for the link. You have certainly > thought through these issues much more deeply than I have and I appreciate > your perspective. I am trying to parse the meanings of your three > fundamentals, so please let me know if I am getting the main ideas right. > > ?Aleatoricism? seems to reflect the creativity associated with dynamics at > ?the edge of chaos?, or inherent to self-organization. I would strongly > agree with this as an essential fundamental that was not explicit in my > formulation. I would argue that aleatoricism and feedback are implicit in > the notion of metabolism, but I like that you pull them out. > > I?m not sure what you are suggesting with the term ?centripetality?. Is > this meant to reference the functional and dynamical coherence of > self-organizing systems? > > Regards, > > Guy > > > > On Mar 29, 2016, at 3:39 PM, Robert E. Ulanowicz <u...@umces.edu> wrote: > > > > Dear Guy, > > > > Please allow me to respond to your invitation to Terry with my two cents. > > > > My triad for supporting the dynamics of life is a bit different. I see > the > > three essential fundamentals as: > > > > 1. Aleatoricism > > > > 2. Feedback > > > > 3. Memory > > > > Just to briefly elaborate on each: > > > > 1. I use aleatoricism to avoid the baggage associated with the term > > "chance", which most immediately associate with "blind" chance. The > > aleatoric spans the spectrum from unique events to blind chance to > > conditional chance to propensities to just short of determinism. > > > > 2. More specifically (and in parallel with autopoesis) I focus on > > autocatalytic feedback, which exhibits the property of "centripetality". > > Centripetality appears on almost no one's list of properties of life, > > despite its ubiquity in association with living systems. > > > > 3. Memory (and information) likely inhered in stable configurations of > > processes (metabolism) well before the advent of molecular encoding. > Terry > > speaks to this point in Biological Theory 1(2):136-49. > > > > My fundamentals do not include reproduction, because I see reproduction > as > > corollary to 2 & 3. > > > > I propose a full metaphysics for life predicated on these three > > assumptions. > > <http://people.clas.ufl.edu/ulan/publications/philosophy/3rdwindow/> > > > > Looking forward to what others see as fundamental. > > > > Peace, > > Bob > > > > > >> I personally consider metabolism to be at the core of what constitutes > >> ??~life??T, so the notion of autopoeisis is very attractive to me. It > is > >> also possible that the richness of life as we know it depends on having > >> metabolisms (activity), genomes (memory), and reproduction combined. > The > >> reductionistic approach to singling out one of these three pillars of > life > >> as its essence may be futile. However, I want to point out that the > most > >> reduced version of ??~life??T I have seen was proposed by Terry Deacon > in > >> the concept he calls ??oautocells???. Terry has made great > contributions > >> to FIS dealing with related topics, and I hope he will chime in here to > >> describe his minimalist form of life, which is not cellular, does not > have > >> any metabolism or genetically encoded memory. Autocells do, however, > >> reproduce. > >> > >> Regards, > >> > >> Guy > > > > > > > > > ------------------------------ > > Message: 3 > Date: Wed, 30 Mar 2016 01:06:54 +0200 > From: "Dr. Plamen L. Simeonov" <plamen.l.simeo...@gmail.com> > To: Louis H Kauffman <kauff...@uic.edu> > Cc: fis <fis@listas.unizar.es> > Subject: [Fis] _ Re: _ Re: _ Re: _ Re: On mathematical theories and > models in biology > Message-ID: > <CAMBikj4SJLgD6HEpMZFkoDZejOCRWBu5L2Jrb=- > nduvcsh1...@mail.gmail.com> > Content-Type: text/plain; charset="utf-8" > > I think you are right, Lou, with respect to Deutsch who actually met > Everett III with the multiple universe hypothesis. The sole name > ?constructor theory? invoked associations beyond the quantum frame in me, > but he did not went that far. As for Josephson, I am not quite sure about > his notion. Brian remains firmly on the quantum level in the papers I > referred earlier, but he often returns to Ilexa Yarley?s ?circular theory? > which offers a much broader interpretation in my opinion. I expected your > mentioning of (the vibrations of) ?thought forms?, which are supposed to > invoke the emergence of word and action. I welcome your understanding for > the necessity of a deeper QM to make the links between actuality and the > bounded potentiality more comprehensive. > > Best, > > Plamen > > > > > On Wed, Mar 30, 2016 at 12:33 AM, Louis H Kauffman <kauff...@uic.edu> > wrote: > > > Josephson and Deutsh are not ?deeper than QM?. Deutsch for example is a > > very literal interpretation of QM that says that all the trajectories in > > the Feynman path sum are real, and they occur in parallel universes. This > > is a nice mathematical way to think, but it is not deeper than present > QM! > > Energy is conserved, but ?particles? and indeed universes can be created > > from vacuum. If we want to go to discussion of ?holy spirit? then one > > should look at the structure of thought itself. For it is at the level of > > thought that every concept has a life behind it. Every idea is real and > > alive. Platonism asserts this directly in the belief in the existence of > > form and this form is a living form that we interact with and we are. How > > these notions are related to QM probably does await the emergence of a > > deeper QM. > > > > On Mar 29, 2016, at 4:43 PM, Dr. Plamen L. Simeonov < > > plamen.l.simeo...@gmail.com> wrote: > > > > > > > > Thank you for your responses, Lou and Stan. I am aware about the details > > of the autopoietic model. What I was actually addressing by the > transition > > from abiotic to biotic structures and the later emergence of RNA and DNA > > was this elusive aspect of ?mass action? which Stan mentioned, that in > my > > opinion must have emerged out of the field of ?triggered (by resonance) > > potentialities which deeper theories than QM are trying to develop (cf. > > Josephson and Deutsch mentioned earlier). This enigmatic emergence of > > action out of nothing (vacuum or pure potentiality) naturally allows the > > (co-)existence of such heretic ideas as the immaterial ?Holy Spirit? or > > Hans Driesch?s vitalism, Jean Sharon?s eternal electron, or ?The Matrix > of > > Matter and Life?at the sub-Planckian scale. How about this possible link > to > > Platonism, theology, logic and algebra? > > > > All the best, > > > > Plamen > > > > PS. I do not know why my notes appear twice on this list. > > > > > > > > On Tue, Mar 29, 2016 at 10:55 PM, Louis H Kauffman <kauff...@uic.edu> > > wrote: > > > >> This is a reply to Plamen?s comment about autopoeisis. In their paper > >> Maturana,Uribe and Varela give a working model (computer model) for > >> autopoeisis. > >> It is very simple, consisting of a subtrate of nodal elements that tend > >> to bond when in proximity, and a collection of catalytic nodal elements > >> that promote bonding in their vicinity. The result of this dynamics is > that > >> carapaces of linked nodal elements form around the catalytic elements > and > >> these photo-cells tend to keep surviving the perturbations built into > the > >> system. This model shows that cells can arise from a very simple > dynmamic > >> geometric/topological substrate long before anything as sophisticated as > >> DNA has happened. > >> > >> On Mar 29, 2016, at 2:54 PM, Stanley N Salthe <ssal...@binghamton.edu> > >> wrote: > >> > >> Plamen wrote: > >> > >> I begin to believe that the transition from abiotic to biotic > >> structures, incl. Maturana-Varela.-Uribe?s autopoiesis may, really have > >> some underlying matrix/?skeleton?/?programme? which has nothing in > common > >> with the nature of DNA, and that DNA and RNA as we know them today may > >> have emerged as secondary or even tertiary ?memory? of something > underlying > >> deeper below the microbiological surface. It is at least worth thinking > in > >> this direction. I do not mean necessarily the role of the number concept > >> and Platonic origin of the universe, but something probably much more > >> ?physical? > >> > >> > >> > >> S: An interesting recently published effort along these lines is: > >> > >> Alvaro Moreno and Matteo Mossio: Biological Autonomy: A Philosophical > and > >> Theoretical Enquiry (History, Philosophy and Theory of the Life Sciences > >> 12) Springer > >> > >> They seek a materialist understanding of biology as a system, attempting > >> to refer to the genetic system as little as possible. > >> > >> I have until very recently attempted to evade/avoid mechanistic thinking > >> in regard to biology, but, on considering the origin of life generally > >> while keeping Howard Pattee's thinking in mind, I have been struck by > the > >> notion that the origin of life (that is: WITH the genetic system) was > the > >> origin of mechanism in the universe. Before that coding system, > everything > >> was mass action. I think we still do not understand how this mechanism > >> evolved. > >> > >> STAN > >> > >> On Tue, Mar 29, 2016 at 7:40 AM, Dr. Plamen L. Simeonov < > >> plamen.l.simeo...@gmail.com> wrote: > >> > >>> > >>> Dear Lou, Pedro and All, > >>> > >>> > >>> > >>> I am going to present a few opportunistic ideas related to what was > said > >>> before in this session. Coming back to Pivar?s speculative > >>> mechano-topological model of life excluding genetics I wish to turn > your > >>> attention to another author with a similar idea but on a sound > mathematical > >>> base, Davide Ambrosi with his resume at > >>> > https://www.uni-muenster.de/imperia/md/content/cim/events/cim-mathmod-workshop-2015_abstracts.pdf > >>> : > >>> > >>> ?Davide Ambrosi: > >>> > >>> A role for mechanics in the growth, remodelling and morphogenesis of > >>> living systems In the XX Century the interactions between mechanics in > >>> biology were much biased by a bioengineering attitude: people were > >>> mainly interested in evaluating the state of stress that bones and > >>> tissues undergo in order to properly design prosthesis and devices. > >>> However in the last decades a new vision is emerging. > "Mechano-biology" is > >>> changing the point of view, with respect to "Bio-mechanics", > emphasizing > >>> the biological feedback. Cells, tissues and organs do not only deform > when > >>> loaded: they reorganize, they duplicate, they actively produce dynamic > >>> patterns that apparently have multiple biological aims. > >>> > >>> In this talk I will concentrate on two paradigmatic systems where the > >>> interplay between mechanics and biology is, in my opinion, particularly > >>> challenging: the homeostatic stress as a driver for remodeling of soft > >>> tissue and the tension as a mechanism to transmit information about the > >>> size of organs during morphogenesis. In both cases it seems that > mechanics > >>> plays a role which at least accompanies and enforces the biochemical > >>> signaling.? > >>> > >>> > >>> > >>> Some more details about this approach can be found here: > >>> > >>> http://rsta.royalsocietypublishing.org/content/367/1902/3335 > >>> > >>> http://biomechanics.stanford.edu/paper/MFOreport.pdf > >>> > >>> In other words, for the core information theorists in FIS, the question > >>> is: is there really only (epi)genetic evolution communication in living > >>> organisms. Stan Salthe and Lou Kauffman already provided some answers. > I > >>> begin to believe that the transition from abiotic to biotic structures, > >>> incl. Maturana-Varela.-Uribe?s autopoiesis may, really have some > underlying > >>> matrix/?skeleton?/?programme? which has nothing in common with the > nature > >>> of DNA, and that DNA and RNA as we know them today > >>> > >>> http://www.sciencedirect.com/science/article/pii/S0022519314006778 > >>> > >>> http://www.sciencedirect.com/science/article/pii/S0022519316001260 > >>> > >>> https://www.sciencedaily.com/releases/2015/01/150107101405.htm > >>> > >>> may have emerged as secondary or even tertiary ?memory? of something > >>> underlying deeper below the microbiological surface. It is at least > worth > >>> thinking in this direction. I do not mean necessarily the role of the > >>> number concept and Platonic origin of the universe, but something > probably > >>> much more ?physical? or at least staying at the edge between > >>> physical/material and immaterial such as David Deutsch?s constructor > theory > >>> (http://constructortheory.org/) and Brian Josephson?s > >>> ?structural/circular theory? ( > >>> http://arxiv.org/ftp/arxiv/papers/1502/1502.02429.pdf; > >>> http://arxiv.org/ftp/arxiv/papers/1506/1506.06774.pdf; > >>> http://arxiv.org/pdf/1108.4860.pdf) searching for the theories > >>> underpinning the foundations of the physical laws (and following > Wheeler?s > >>> definition for a ?Law without Law?. > >>> > >>> Some of you may say that QT and Gravitation Theory are responsible for > >>> such kind of strange effects, but I would rather leave the brackets > open, > >>> because the recent discussion about potentialities and actualities in > QM > >>> brings up the idea that there are still different ways of looking at > those > >>> concepts (although they are strictly defined in their core domains). > This > >>> was actually also the lesson from the last special issue on integral > >>> biomathics (2015) dedicated to phenomenology, with the different > opinions > >>> of scientists and philosophers on obviously clear matters in their > domains. > >>> This is why also the question of what we define as science needs to be > >>> probably revised in future to include also such issues that are ?felt? > >>> rather than ?reasoned?, even if we do not have the ?proofs? yet, > because > >>> the proofs also emerge as subjective (or perhaps ?suggested?! ? ask the > >>> psychologists for that aspect) thoughts in the minds of the > mathematicians. > >>> I am really glad that we began such a phenomenological discussion on > this > >>> aspect such as Hipolito?s paper ( > >>> http://www.sciencedirect.com/science/article/pii/S0079610715000899) > >>> that was widely commented in the reviewer?s circle. In many cases when > we > >>> have a ?fuzzy? intuition about a certain relationship or analogy we > miss > >>> the correct definitions and concepts, and so in a creative act to hold > down > >>> the flying thought we move to using examples, metaphors, pictures. > Pedro > >>> correctly addressed the explanatory problem of science which > presupposes a > >>> certain causative and predicative ?workflow? to derive a conclusion > from > >>> the facts, and this is the way in which also proofs are (selectively) > made. > >>> As a young scholar I often wondered how artificially people like Gauss, > >>> Cauchy and Weierstrass design their proofs, but then I got used to > >>> that style. I am thankful to Lou for his response on my question about > >>> using adequate ?resonant? methods to model developmental biology, > because > >>> this is also an important aspect of the biology (and physics as well) > >>> including the phenomenological/first-person view of an > >>> ?observer-participant? (to use Vrobel?s term) which is crucial for > >>> understanding the process of self-reflection/recursion/cycle in > science, > >>> which is usually led by what?: the intuition, also well recognized by > such > >>> giants like Poincare and Einstein. Isn?t not ?resonance? in the core of > >>> detecting such vibration between the observer and the observed? Because > >>> logic, back trace, prove come later. > >>> > >>> And finally, when looking at the clear simple mathematical abstractions > >>> of numbers, vectors, directions, sets, algebras, geometries, etc. used > by > >>> many without scrutinizing when developing system (biological) models > of yet > >>> another kind of mechanics/automation/machinery of the physical > reality, I > >>> am asking myself which are the premises for using such tools to > describe a > >>> model: the parameters, or the idea behind? It is probably not a > commonly > >>> known fact (even for those who are engaged with such exciting > disciplines > >>> as algebraic geometry and geometrical algebra, now considered to be > very > >>> close to what we wish to express in biology) that William Hamilton, the > >>> inventor of the quaternions did not simply use the already known > concept of > >>> ?vector? in his method. Instead he used ?step? with ?direction? to > express > >>> a duration of time (or ?duree? as Husserl called it from the other > side of > >>> the phenomenological divide) and action (to move from A to B): two very > >>> biology-related concepts at that time (although they may be considered > as > >>> physical or computational today). He actually stated that if there is > >>> geometry as a pure science of space, then algebra must be the pure > science > >>> of time [1]. What did we actually gain for biology from merging space > and > >>> time in physics? > >>> > >>> Reference: > >>> > >>> [1] W. R. Hamilton, 1835. Theory of Conjugate Functions, or Algebraic > >>> Couples; with a Preliminary or Elementary Essay on Algebra as the > Science > >>> of Pure Time. *Trans. Royal Irish Acad*., Vol. XVII, Part II. 292-422. > >>> > >>> > >>> Best, > >>> > >>> > >>> Plamen > >>> > >>> > >>> I have a few provoking notes related to what was said before in this > >>> session. Coming back to Pivar?s speculative mechano-topological model > of > >>> life excluding genetics I wish to turn your attention to another author > >>> with a similar idea but on a sound mathematical base, Davide Ambrosi > with > >>> his resume at > >>> > https://www.uni-muenster.de/imperia/md/content/cim/events/cim-mathmod-workshop-2015_abstracts.pdf > >>> : > >>> > >>> ?Davide Ambrosi: > >>> > >>> A role for mechanics in the growth, remodelling and morphogenesis of > >>> living systems In the XX Century the interactions between mechanics in > >>> biology were much biased by a bioengineering attitude: people were > >>> mainly interested in evaluating the state of stress that bones and > >>> tissues undergo in order to properly design prosthesis and devices. > >>> However in the last decades a new vision is emerging. > "Mechano-biology" is > >>> changing the point of view, with respect to "Bio-mechanics", > emphasizing > >>> the biological feedback. Cells, tissues and organs do not only deform > when > >>> loaded: they reorganize, they duplicate, they actively produce dynamic > >>> patterns that apparently have multiple biological aims. > >>> > >>> In this talk I will concentrate on two paradigmatic systems where the > >>> interplay between mechanics and biology is, in my opinion, particularly > >>> challenging: the homeostatic stress as a driver for remodeling of soft > >>> tissue and the tension as a mechanism to transmit information about the > >>> size of organs during morphogenesis. In both cases it seems that > mechanics > >>> plays a role which at least accompanies and enforces the biochemical > >>> signaling.? > >>> > >>> > >>> > >>> Some more details about this approach can be found here: > >>> > >>> http://rsta.royalsocietypublishing.org/content/367/1902/3335 > >>> > >>> http://biomechanics.stanford.edu/paper/MFOreport.pdf > >>> > >>> In other words, for the core information theorists in FIS, the question > >>> is: is there really only (epi)genetic evolution communication in living > >>> organisms. Stan Salthe and Lou Kauffman already provided some answers. > I > >>> begin to believe that the transition from abiotic to biotic structures, > >>> incl. Maturana-Varela.-Uribe?s autopoiesis may, really have some > underlying > >>> matrix/?skeleton?/?programme? which has nothing in common with the > nature > >>> of DNA, and that DNA and RNA as we know them today > >>> > >>> http://www.sciencedirect.com/science/article/pii/S0022519314006778 > >>> > >>> http://www.sciencedirect.com/science/article/pii/S0022519316001260 > >>> > >>> https://www.sciencedaily.com/releases/2015/01/150107101405.htm > >>> > >>> may have emerged as secondary or even tertiary ?memory? of something > >>> underlying deeper below the microbiological surface. It is at least > worth > >>> thinking in this direction. I do not mean necessarily the role of the > >>> number concept and Platonic origin of the universe, but something > probably > >>> much more ?physical? or at least staying at the edge between > >>> physical/material and immaterial such as David Deutsch?s constructor > theory > >>> (http://constructortheory.org/) and Brian Josephson?s > >>> ?structural/circular theory? ( > >>> http://arxiv.org/ftp/arxiv/papers/1502/1502.02429.pdf; > >>> http://arxiv.org/ftp/arxiv/papers/1506/1506.06774.pdf; > >>> http://arxiv.org/pdf/1108.4860.pdf) searching for the theories > >>> underpinning the foundations of the physical laws (and following > Wheeler?s > >>> definition for a ?Law without Law?. > >>> > >>> Some of you may say that QT and Gravitation Theory are responsible for > >>> such kind of strange effects, but I would rather leave the brackets > open, > >>> because the recent discussion about potentialities and actualities in > QM > >>> brings up the idea that there are still different ways of looking at > those > >>> concepts (although they are strictly defined in their core domains). > This > >>> was actually also the lesson from the last special issue on integral > >>> biomathics (2015) dedicated to phenomenology, with the different > opinions > >>> of scientists and philosophers on obviously clear matters in their > domains. > >>> This is why also the question of what we define as science needs to be > >>> probably revised in future to include also such issues that are ?felt? > >>> rather than ?reasoned?, even if we do not have the ?proofs? yet, > because > >>> the proofs also emerge as subjective (or perhaps ?suggested?! ? ask the > >>> psychologists for that aspect) thoughts in the minds of the > mathematicians. > >>> I am really glad that we began such a phenomenological discussion on > this > >>> aspect such as Hipolito?s paper ( > >>> http://www.sciencedirect.com/science/article/pii/S0079610715000899) > >>> that was widely commented in the reviewer?s circle. In many cases when > we > >>> have a ?fuzzy? intuition about a certain relationship or analogy we > miss > >>> the correct definitions and concepts, and so in a creative act to hold > down > >>> the flying thought we move to using examples, metaphors, pictures. > Pedro > >>> correctly addressed the explanatory problem of science which > presupposes a > >>> certain causative and predicative ?workflow? to derive a conclusion > from > >>> the facts, and this is the way in which also proofs are (selectively) > made. > >>> As a young scholar I often wondered how artificially people like Gauss, > >>> Cauchy and Weierstrass design their proofs, but then I got used to > >>> that style. It was a question of overall convention. I am thankful to > Lou > >>> for his response on my question about using adequate ?resonant? > methods to > >>> model developmental biology, because this is also an important aspect > of > >>> the biology (and physics as well) including the > >>> phenomenological/first-person view of an ?observer-participant? (to use > >>> Vrobel?s term) which is crucial for understanding the process of > >>> self-reflection/recursion/cycle in science, which is usually led by > what?: > >>> the intuition, also well recognized by such giants like Poincare and > >>> Einstein. Isn?t not ?resonance? in the core of detecting such vibration > >>> between the observer and the observed? Because logic, backtracing and > proof > >>> come later. > >>> > >>> > >>> And finally, when looking at the clear simple mathematical abstractions > >>> of numbers, vectors, directions, sets, algebras, geometries, etc. used > by > >>> many without scrutinizing when developing system (biological) models > of yet > >>> another kind of mechanics/automation/machinery of the physical > reality, I > >>> am asking myself which are the premises for using such tools to > describe a > >>> model: the parameters, or the idea behind? It is probably not a > commonly > >>> known fact (even for those who are engaged with such exciting > disciplines > >>> as algebraic geometry and geometrical algebra, now considered to be > very > >>> close to what we wish to express in biology) that William Hamilton, the > >>> inventor of the quaternions did not simply use the already known > concept of > >>> ?vector? in his method. Instead he used ?step? with ?direction? to > express > >>> a duration of time (or ?duree? as Husserl called it from the other > side of > >>> the phenomenological divide) and action (to move from A to B): two very > >>> biology-related concepts at that time (although they may be considered > as > >>> physical or computational today). He actually stated that if there is > >>> geometry as a pure science of space, then algebra must be the pure > science > >>> of time [1]. What did we actually gain for biology from merging space > and > >>> time in physics? And if we apply a specific mathematical-computational > >>> technique what is the key idea/intuition behind it?. Because, as a > >>> colleague pathologist told me this morning about the model correctness > when > >>> predicting the development of tumors: the model can be assumed for > being > >>> correct based on the interpretation of some (limited) set of data, but > >>> Ptolemy's system was also considered to be correct in its rather > complex > >>> way of predicting the movement of the celestial bodies. Where is the > >>> difference? I am curious about your opinion. > >>> > >>> > >>> *Reference:* > >>> > >>> [1] W. R. Hamilton, 1835. Theory of Conjugate Functions, or Algebraic > >>> Couples; with a Preliminary or Elementary Essay on Algebra as the > Science > >>> of Pure Time. *Trans. Royal Irish Acad*., Vol. XVII, Part II. 292-422. > >>> > >>> > >>> Best, > >>> > >>> > >>> Plamen > >>> ______________________ > >>> > >>> 2015 JPBMB Special Issue on Integral Biomathics: Life Sciences, > >>> Mathematics and Phenomenological Philosophy > >>> <http://www.sciencedirect.com/science/journal/00796107/119/3> > >>> (note: free access to all articles until July 19th, 2016) > >>> > >>> > >>> _______________________________________________ > >>> Fis mailing list > >>> Fis@listas.unizar.es > >>> http://listas.unizar.es/cgi-bin/mailman/listinfo/fis > >>> > >>> > >> _______________________________________________ > >> Fis mailing list > >> Fis@listas.unizar.es > >> http://listas.unizar.es/cgi-bin/mailman/listinfo/fis > >> > >> > >> > >> _______________________________________________ > >> Fis mailing list > >> Fis@listas.unizar.es > >> http://listas.unizar.es/cgi-bin/mailman/listinfo/fis > >> > >> > > _______________________________________________ > > Fis mailing list > > Fis@listas.unizar.es > > http://listas.unizar.es/cgi-bin/mailman/listinfo/fis > > > > > > > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: < > http://listas.unizar.es/pipermail/fis/attachments/20160330/4878398c/attachment.html > > > > ------------------------------ > > Subject: Digest Footer > > _______________________________________________ > Fis mailing list > Fis@listas.unizar.es > http://listas.unizar.es/cgi-bin/mailman/listinfo/fis > > > ------------------------------ > > End of Fis Digest, Vol 24, Issue 39 > *********************************** > -- Alex Hankey M.A. (Cantab.) PhD (M.I.T.) Distinguished Professor of Yoga and Physical Science, SVYASA, Eknath Bhavan, 19 Gavipuram Circle Bangalore 560019, Karnataka, India Mobile (Intn'l): +44 7710 534195 Mobile (India) +91 900 800 8789 ____________________________________________________________ 2015 JPBMB Special Issue on Integral Biomathics: Life Sciences, Mathematics and Phenomenological Philosophy <http://www.sciencedirect.com/science/journal/00796107/119/3>
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