It's not only for Flex.   Flex == Flash.  That's like saying "It's only
for Ruby, not Rails."  Rails is written in Ruby.

Flex 2 is built with Flash.  It's simply a bunch of classes and
components written in AS3 that provide a framework for developing
applications.

Currently, the Apollo compiler is a plug-in for Flex Builder 2, but you
could make a stub projector that will load any AS3 swf, which there are
multiple ways to write.  There's the Flash 8 patch to publish Flash 9,
the ANT compiler which works with FlashDevelop, and Flex Builder 2.
Yes, you can write regular AS3 swfs with Flex Builder.  Flex Builder is
just Eclipse with a plug-in.

I'm not sure what you "need" Apollo for.  It's still in beta, and even
after launch, I'm sure that like every single other wrapper out there,
it will need time to work the kinks out before it will be ready for mass
distribution.  If you have a client depending on a Flash wrapper
technology, you should look to mProjector or Zinc.
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