Hi Aljaz,
As proposed I tried several things:
1 - applied latest patch
Not so necessary, without any patch RTKLib had correctly decoded and processed u-Blox LEA-4T and LEA-5T observables (RXM-RAW) and navigation data (RXM-SFRB) since 2.2.2 version (as far as I tested).

2 - took base station data as correction input
Corrections (mainly RTCM-SC104 protocol) have another format entirely different to RXM-RAW, RXM-SFRB (observation and navigation) messages.

3 - recorded input streams for rover and base

I changed the hardware set-up to simplify the case. Now both receivers are 
connected via usb to my computer. They don't move. My first question is which 
positioning mode should be used for evaluation/best precision?  DGPS/DGNSS, 
Static, Fixed ...? I hope my questions are not too stupid.
If the rover receiver is not moving, you should go with all the defaults, "Static" Positioning Mode and "Continuous" Integer Ambiguity Resolution. You can't get results if you don't set a position for the receiver's antenna acting as base.

I tried some modes but results were strange meaning that normally the solution was only single but for example with fixed mode position went to N 89 59 59.99 E 180 00 00 H -6335368 ...
"Fixed" means that the rover is in a fixed and exactly defined position. Those results (N 89 59 59.99 E 180 00 00 H -6335368) are the defaults for the rover's antenna position.
Can anybody comment on #2 above? Is this a correct way or are base data meant 
to be used as input stream for base station?
You are right. Base data is meant to be used as input stream for base station.

Finally, I logged streams from rover and base. I was able to open and display 
both with u-center. With RTKPost I successfully opened the one from rover but 
the other from base contained no data after transformation (file .pos has only 
the header). Interestingly the original ubx files  for rover and base had 
different sizes (for the same length of time): rover - 1605 kB, base - 447 kB.
Both should be of equal size, or at least very close. Maybe you should check the MSG (messages) settings, on the "Configuration View Window" at u-Center for both receivers (deactivate message by message on every port, to finish activating JUST RXM-RAW and RXM-SFRB). Right now I was connecting our LEA-5T u-Blox receiver with RTKNavi, to recall that the correct output protocol to use IS NOT "RAW", BUT "UBX" OR "UBX_NMEA". Maybe that's the main issue for you and for others that asked for similar help. Without checking it like I'm doing now, I recall advising others to set "RAW" as the output protocol for the selected port (I'm very sorry for that!!!). It's a 6T the one you are using right?.

Also I noticed some strange behavior of RTKNavi. After some time of running it 
starts sticking - for shorter or longer periods of time there's no change in 
calculated position with no new points plotted. Afterwards it resumes 
(calculates and plots again). Normally if I stop and start the program again 
everything looks normal (as if some buffer gets full and needs to be emptied 
from time to time). My signal from satellites is ok so this shouldn't be a 
problem.
Never experienced this.

And I still haven't obtained the coordinates to fix the position of my base.
Modify the protocol output to UBX, deactivate any other message that's not RAW or SFRB, and collect some data to generate a pos file for your base receiver (for testing purposes half an hour is enough). Then use the average or median position as the base station's antenna position, and try again.

Best regards,

--
Mauro Ugarte A.
Researcher - Electronic Engineer
Satellite Remote Sensing Laboratory
Optical Instrumentation and Information Division
Center For Optics and Photonics | www.cefop.cl
Universidad de Concepción | www.udec.cl
Phone/Fax: (56) 41-2204740 | mauro.uga...@cefop.cl



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