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Maintainer: y...@freebsd.org Log URL: https://pkg-status.freebsd.org/ampere1/data/140arm64-quarterly/3c61f1a4a763/logs/libbigwig-0.4.7.log Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=140arm64-quarterly&build=3c61f1a4a763 Log: =>> Building biology/libbigwig build started at Mon Jan 1 08:32:37 UTC 2024 port directory: /usr/ports/biology/libbigwig package name: libbigwig-0.4.7 building for: FreeBSD 140arm64-quarterly-job-13 14.0-RELEASE-p3 FreeBSD 14.0-RELEASE-p3 arm64 maintained by: y...@freebsd.org Makefile datestamp: -rw-r--r-- 1 root wheel 751 Oct 5 01:01 /usr/ports/biology/libbigwig/Makefile Ports top last git commit: 3c61f1a4a Ports top unclean checkout: no Port dir last git commit: 46c5200e9 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.0 Host OSVERSION: 1500006 Jail OSVERSION: 1400097 Job Id: 13 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400097 UNAME_v=FreeBSD 14.0-RELEASE-p3 UNAME_r=14.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.0 MASTERMNT=/usr/local/poudriere/data/.m/140arm64-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/140arm64-quarterly/13/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=140arm64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/140arm64-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.0 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- y...@freebsd.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/libbigwig/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/libbigwig/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/libbigwig/work/.cache HOME=/wrkdirs/usr/ports/biology/libbigwig/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/libbigwig/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/libbigwig/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/libbigwig/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/libbigwig/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/libbigwig/work/.cache HOME=/wrkdirs/usr/ports/biology/libbigwig/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/libbigwig/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/libbigwig/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/libbigwig/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr /local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/libbigwig" EXAMPLESDIR="share/examples/libbigwig" DATADIR="share/libbigwig" WWWDIR="www/libbigwig" ETCDIR="etc/libbigwig" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libbigwig DOCSDIR=/usr/local/share/doc/libbigwig EXAMPLESDIR=/usr/local/share/examples/libbigwig WWWDIR=/usr/local/www/libbigwig ETCDIR=/usr/local/etc/libbigwig --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> libbigwig-0.4.7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [140arm64-quarterly-job-13] Installing pkg-1.20.9... [140arm64-quarterly-job-13] Extracting pkg-1.20.9: .......... done ===> libbigwig-0.4.7 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libbigwig-0.4.7 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by libbigwig-0.4.7 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by libbigwig-0.4.7 for building => SHA256 Checksum OK for dpryan79-libBigWig-0.4.7_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by libbigwig-0.4.7 for building ===> Extracting for libbigwig-0.4.7 => SHA256 Checksum OK for dpryan79-libBigWig-0.4.7_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for libbigwig-0.4.7 ===> Applying FreeBSD patches for libbigwig-0.4.7 from /usr/ports/biology/libbigwig/files =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> libbigwig-0.4.7 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.26.1_3.pkg [140arm64-quarterly-job-13] Installing cmake-core-3.26.1_3... [140arm64-quarterly-job-13] `-- Installing expat-2.5.0... [140arm64-quarterly-job-13] `-- Extracting expat-2.5.0: .......... done [140arm64-quarterly-job-13] `-- Installing jsoncpp-1.9.5... [140arm64-quarterly-job-13] `-- Extracting jsoncpp-1.9.5: .......... done [140arm64-quarterly-job-13] `-- Installing libuv-1.46.0... [140arm64-quarterly-job-13] `-- Extracting libuv-1.46.0: .......... done [140arm64-quarterly-job-13] `-- Installing rhash-1.4.4... [140arm64-quarterly-job-13] | `-- Installing gettext-runtime-0.22_1... [140arm64-quarterly-job-13] | | `-- Installing indexinfo-0.3.1... [140arm64-quarterly-job-13] | | `-- Extracting indexinfo-0.3.1: .... done [140arm64-quarterly-job-13] | `-- Extracting gettext-runtime-0.22_1: .......... done [140arm64-quarterly-job-13] `-- Extracting rhash-1.4.4: .......... done [140arm64-quarterly-job-13] Extracting cmake-core-3.26.1_3: .......... done ===> libbigwig-0.4.7 depends on file: /usr/local/bin/cmake - found ===> Returning to build of libbigwig-0.4.7 ===> libbigwig-0.4.7 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,2.pkg [140arm64-quarterly-job-13] Installing ninja-1.11.1,2... [140arm64-quarterly-job-13] `-- Installing python39-3.9.18... [140arm64-quarterly-job-13] | `-- Installing libffi-3.4.4... [140arm64-quarterly-job-13] | `-- Extracting libffi-3.4.4: .......... done [140arm64-quarterly-job-13] | `-- Installing mpdecimal-2.5.1... [140arm64-quarterly-job-13] | `-- Extracting mpdecimal-2.5.1: .......... done [140arm64-quarterly-job-13] | `-- Installing readline-8.2.1... [140arm64-quarterly-job-13] | `-- Extracting readline-8.2.1: .......... done [140arm64-quarterly-job-13] `-- Extracting python39-3.9.18: .......... done [140arm64-quarterly-job-13] Extracting ninja-1.11.1,2: ........ done ===== Message from python39-3.9.18: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> libbigwig-0.4.7 depends on executable: ninja - found ===> Returning to build of libbigwig-0.4.7 =========================================================================== =======================<phase: lib-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> libbigwig-0.4.7 depends on shared library: libcurl.so - not found ===> Installing existing package /packages/All/curl-8.5.0.pkg [140arm64-quarterly-job-13] Installing curl-8.5.0... [140arm64-quarterly-job-13] `-- Installing libnghttp2-1.57.0... [140arm64-quarterly-job-13] `-- Extracting libnghttp2-1.57.0: .......... done [140arm64-quarterly-job-13] `-- Installing libpsl-0.21.2_3... [140arm64-quarterly-job-13] | `-- Installing libidn2-2.3.4... [140arm64-quarterly-job-13] | | `-- Installing libunistring-1.1... [140arm64-quarterly-job-13] | | `-- Extracting libunistring-1.1: .......... done [140arm64-quarterly-job-13] | `-- Extracting libidn2-2.3.4: .......... done [140arm64-quarterly-job-13] `-- Extracting libpsl-0.21.2_3: .......... done [140arm64-quarterly-job-13] `-- Installing libssh2-1.11.0,3... [140arm64-quarterly-job-13] `-- Extracting libssh2-1.11.0,3: .......... done [140arm64-quarterly-job-13] Extracting curl-8.5.0: .......... done ===> libbigwig-0.4.7 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so) ===> Returning to build of libbigwig-0.4.7 =========================================================================== =======================<phase: configure >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for libbigwig-0.4.7 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/libbigwig/work/.build -- The C compiler identification is Clang 16.0.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found ZLIB: /usr/lib/libz.so (found version "1.3") -- Found CURL: /usr/local/lib/libcurl.so (found version "8.5.0") -- Configuring done (0.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_CXX_COMPILER CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/biology/libbigwig/work/.build =========================================================================== =======================<phase: build >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for libbigwig-0.4.7 [ 16% 3/6] /usr/bin/cc -DBigWig_EXPORTS -I/wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DNDEBUG -std=gnu11 -fPIC -Wall -Wsign-compare -MD -MT CMakeFiles/BigWig.dir/bwValues.c.o -MF CMakeFiles/BigWig.dir/bwValues.c.o.d -o CMakeFiles/BigWig.dir/bwValues.c.o -c /wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7/bwValues.c FAILED: CMakeFiles/BigWig.dir/bwValues.c.o /usr/bin/cc -DBigWig_EXPORTS -I/wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DNDEBUG -std=gnu11 -fPIC -Wall -Wsign-compare -MD -MT CMakeFiles/BigWig.dir/bwValues.c.o -MF CMakeFiles/BigWig.dir/bwValues.c.o.d -o CMakeFiles/BigWig.dir/bwValues.c.o -c /wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7/bwValues.c /wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7/bwValues.c:9:35: error: too few arguments provided to function-like macro invocation static uint32_t roundup(uint32_t v) { ^ /usr/include/sys/param.h:326:9: note: macro 'roundup' defined here #define roundup(x, y) ((((x)+((y)-1))/(y))*(y)) /* to any y */ ^ /wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7/bwValues.c:9:24: error: expected ';' after top level declarator static uint32_t roundup(uint32_t v) { ^ ; /wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7/bwValues.c:350:30: error: too few arguments provided to function-like macro invocation o->m = roundup(o->l+1); ^ /usr/include/sys/param.h:326:9: note: macro 'roundup' defined here #define roundup(x, y) ((((x)+((y)-1))/(y))*(y)) /* to any y */ ^ /wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7/bwValues.c:370:30: error: too few arguments provided to function-like macro invocation o->m = roundup(o->l+1); ^ /usr/include/sys/param.h:326:9: note: macro 'roundup' defined here #define roundup(x, y) ((((x)+((y)-1))/(y))*(y)) /* to any y */ ^ 4 errors generated. [ 33% 3/6] /usr/bin/cc -DBigWig_EXPORTS -I/wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DNDEBUG -std=gnu11 -fPIC -Wall -Wsign-compare -MD -MT CMakeFiles/BigWig.dir/bwRead.c.o -MF CMakeFiles/BigWig.dir/bwRead.c.o.d -o CMakeFiles/BigWig.dir/bwRead.c.o -c /wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7/bwRead.c [ 50% 3/6] /usr/bin/cc -DBigWig_EXPORTS -I/wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DNDEBUG -std=gnu11 -fPIC -Wall -Wsign-compare -MD -MT CMakeFiles/BigWig.dir/bwStats.c.o -MF CMakeFiles/BigWig.dir/bwStats.c.o.d -o CMakeFiles/BigWig.dir/bwStats.c.o -c /wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7/bwStats.c ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/libbigwig