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Maintainer: [email protected] Log URL: https://pkg-status.freebsd.org/package19/data/141amd64-default-build-as-user/b039f2e46b15/logs/py311-pyprecice-2.5.0.4.log Build URL: https://pkg-status.freebsd.org/package19/build.html?mastername=141amd64-default-build-as-user&build=b039f2e46b15 Log: =>> Building science/py-pyprecice build started at Fri Nov 15 13:47:39 UTC 2024 port directory: /usr/ports/science/py-pyprecice package name: py311-pyprecice-2.5.0.4 building for: FreeBSD 141amd64-default-build-as-user-job-05 14.1-RELEASE-p6 FreeBSD 14.1-RELEASE-p6 amd64 maintained by: [email protected] Makefile datestamp: -rw-r--r-- 1 root wheel 920 Aug 16 2023 /usr/ports/science/py-pyprecice/Makefile Ports top last git commit: b039f2e46b1 Ports top unclean checkout: no Port dir last git commit: bc4b36c2a0d Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500023 Jail OSVERSION: 1401000 Job Id: 05 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1401000 UNAME_v=FreeBSD 14.1-RELEASE-p6 UNAME_r=14.1-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/poudriere/data/.m/141amd64-default-build-as-user/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/poudriere/data/.m/141amd64-default-build-as-user/05/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=141amd64-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/poudriere/data/.m/141amd64-default-build-as-user/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-pyprecice/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-pyprecice/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-pyprecice/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-pyprecice/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-pyprecice/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-pyprecice/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-pyprecice/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-pyprecice/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-pyprecice/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-pyprecice/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-pyprecice/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-pyprecice/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fsta ck-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pyprecice" EXAMPLESDIR="share/examples/pyprecice" DATADIR="share/pyprecice" WWWDIR="www/pyprecice" ETCDIR="etc/pyprecice" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pyprecice DOCSDIR=/usr/local/share/doc/pyprecice EXAMPLESDIR=/usr/local/share/examples/pyprecice WWWDIR=/usr/local/www/pyprecice ETCDIR=/usr/local/etc/pyprecice --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License LGPL3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pyprecice-2.5.0.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [141amd64-default-build-as-user-job-05] Installing pkg-1.21.3... [141amd64-default-build-as-user-job-05] Extracting pkg-1.21.3: .......... done ===> py311-pyprecice-2.5.0.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-pyprecice-2.5.0.4 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by py311-pyprecice-2.5.0.4 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by py311-pyprecice-2.5.0.4 for building => SHA256 Checksum OK for precice-python-bindings-v2.5.0.4_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by py311-pyprecice-2.5.0.4 for building ===> Extracting for py311-pyprecice-2.5.0.4 => SHA256 Checksum OK for precice-python-bindings-v2.5.0.4_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py311-pyprecice-2.5.0.4 =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pyprecice-2.5.0.4 depends on package: py311-numpy>=1.16,1<1.27,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_2,1.pkg [141amd64-default-build-as-user-job-05] Installing py311-numpy-1.26.4_2,1... [141amd64-default-build-as-user-job-05] `-- Installing gcc13-13.3.0... [141amd64-default-build-as-user-job-05] | `-- Installing binutils-2.43.1,1... [141amd64-default-build-as-user-job-05] | | `-- Installing indexinfo-0.3.1... [141amd64-default-build-as-user-job-05] | | `-- Extracting indexinfo-0.3.1: .... done [141amd64-default-build-as-user-job-05] | | `-- Installing zstd-1.5.6... [141amd64-default-build-as-user-job-05] | | `-- Installing liblz4-1.10.0,1... [141amd64-default-build-as-user-job-05] | | `-- Extracting liblz4-1.10.0,1: .......... done [141amd64-default-build-as-user-job-05] | | `-- Extracting zstd-1.5.6: .......... done [141amd64-default-build-as-user-job-05] | `-- Extracting binutils-2.43.1,1: .......... done [141amd64-default-build-as-user-job-05] | `-- Installing gmp-6.3.0... [141amd64-default-build-as-user-job-05] | `-- Extracting gmp-6.3.0: .......... done [141amd64-default-build-as-user-job-05] | `-- Installing mpc-1.3.1_1... [141amd64-default-build-as-user-job-05] | | `-- Installing mpfr-4.2.1,1... [141amd64-default-build-as-user-job-05] | | `-- Extracting mpfr-4.2.1,1: .......... done [141amd64-default-build-as-user-job-05] | `-- Extracting mpc-1.3.1_1: ......... done [141amd64-default-build-as-user-job-05] `-- Extracting gcc13-13.3.0: .......... done [141amd64-default-build-as-user-job-05] `-- Installing openblas-0.3.27,2... [141amd64-default-build-as-user-job-05] `-- Extracting openblas-0.3.27,2: .......... done [141amd64-default-build-as-user-job-05] `-- Installing py311-setuptools-63.1.0_1... [141amd64-default-build-as-user-job-05] | `-- Installing python311-3.11.10... [141amd64-default-build-as-user-job-05] | | `-- Installing gettext-runtime-0.22.5... [141amd64-default-build-as-user-job-05] | | `-- Extracting gettext-runtime-0.22.5: .......... done [141amd64-default-build-as-user-job-05] | | `-- Installing libffi-3.4.6... [141amd64-default-build-as-user-job-05] | | `-- Extracting libffi-3.4.6: .......... done [141amd64-default-build-as-user-job-05] | | `-- Installing mpdecimal-4.0.0... [141amd64-default-build-as-user-job-05] | | `-- Extracting mpdecimal-4.0.0: .......... done [141amd64-default-build-as-user-job-05] | | `-- Installing readline-8.2.13_2... [141amd64-default-build-as-user-job-05] | | `-- Extracting readline-8.2.13_2: .......... done <snip> [141amd64-default-build-as-user-job-05] | `-- Extracting suitesparse-cholmod-5.2.1_1: .......... done [141amd64-default-build-as-user-job-05] `-- Extracting suitesparse-umfpack-6.3.3_1: .......... done [141amd64-default-build-as-user-job-05] Extracting py311-numpy-1.26.4_2,1: .......... done ===== Message from gcc13-13.3.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python311-3.11.10: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-pyprecice-2.5.0.4 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> Returning to build of py311-pyprecice-2.5.0.4 ===> py311-pyprecice-2.5.0.4 depends on package: py311-mpi4py>0 - not found ===> Installing existing package /packages/All/py311-mpi4py-4.0.1.pkg [141amd64-default-build-as-user-job-05] Installing py311-mpi4py-4.0.1... [141amd64-default-build-as-user-job-05] `-- Installing openmpi-5.0.5_1... [141amd64-default-build-as-user-job-05] | `-- Installing hwloc2-2.11.2... [141amd64-default-build-as-user-job-05] | | `-- Installing level-zero-1.17.45... [141amd64-default-build-as-user-job-05] | | `-- Installing libfmt-10.2.1... [141amd64-default-build-as-user-job-05] | | `-- Extracting libfmt-10.2.1: .......... done [141amd64-default-build-as-user-job-05] | | `-- Installing spdlog-1.14.1... [141amd64-default-build-as-user-job-05] | | `-- Extracting spdlog-1.14.1: .......... done [141amd64-default-build-as-user-job-05] | | `-- Extracting level-zero-1.17.45: .......... done [141amd64-default-build-as-user-job-05] | | `-- Installing libpciaccess-0.18.1... [141amd64-default-build-as-user-job-05] | | `-- Extracting libpciaccess-0.18.1: ........ done [141amd64-default-build-as-user-job-05] | | `-- Installing libxml2-2.11.9... [141amd64-default-build-as-user-job-05] | | `-- Extracting libxml2-2.11.9: .......... done [141amd64-default-build-as-user-job-05] | `-- Extracting hwloc2-2.11.2: .......... done [141amd64-default-build-as-user-job-05] | `-- Installing libevent-2.1.12... [141amd64-default-build-as-user-job-05] | `-- Extracting libevent-2.1.12: .......... done [141amd64-default-build-as-user-job-05] | `-- Installing munge-0.5.16... [141amd64-default-build-as-user-job-05] | | `-- Installing libgcrypt-1.11.0... [141amd64-default-build-as-user-job-05] | | `-- Installing libgpg-error-1.50... [141amd64-default-build-as-user-job-05] | | `-- Extracting libgpg-error-1.50: .......... done [141amd64-default-build-as-user-job-05] | | `-- Extracting libgcrypt-1.11.0: .......... done [141amd64-default-build-as-user-job-05] | `-- Extracting munge-0.5.16: ......... done [141amd64-default-build-as-user-job-05] `-- Extracting openmpi-5.0.5_1: .......... done [141amd64-default-build-as-user-job-05] Extracting py311-mpi4py-4.0.1: .......... done ===> py311-pyprecice-2.5.0.4 depends on package: py311-mpi4py>0 - found ===> Returning to build of py311-pyprecice-2.5.0.4 ===> py311-pyprecice-2.5.0.4 depends on package: py311-pkgconfig>0 - not found ===> Installing existing package /packages/All/py311-pkgconfig-1.5.5_2,1.pkg [141amd64-default-build-as-user-job-05] Installing py311-pkgconfig-1.5.5_2,1... [141amd64-default-build-as-user-job-05] `-- Installing pkgconf-2.3.0,1... [141amd64-default-build-as-user-job-05] `-- Extracting pkgconf-2.3.0,1: .......... done [141amd64-default-build-as-user-job-05] Extracting py311-pkgconfig-1.5.5_2,1: .......... done ===> py311-pyprecice-2.5.0.4 depends on package: py311-pkgconfig>0 - found ===> Returning to build of py311-pyprecice-2.5.0.4 ===> py311-pyprecice-2.5.0.4 depends on package: pkgconf>=1.3.0_1 - found ===> py311-pyprecice-2.5.0.4 depends on executable: cython-3.11 - not found ===> Installing existing package /packages/All/py311-cython-0.29.37_1.pkg [141amd64-default-build-as-user-job-05] Installing py311-cython-0.29.37_1... [141amd64-default-build-as-user-job-05] Extracting py311-cython-0.29.37_1: .......... done ===> py311-pyprecice-2.5.0.4 depends on executable: cython-3.11 - found ===> Returning to build of py311-pyprecice-2.5.0.4 ===> py311-pyprecice-2.5.0.4 depends on package: py311-setuptools>=63.1.0 - found ===> py311-pyprecice-2.5.0.4 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =======================<phase: lib-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pyprecice-2.5.0.4 depends on shared library: libprecice.so - not found ===> Installing existing package /packages/All/precice-3.1.2.pkg [141amd64-default-build-as-user-job-05] Installing precice-3.1.2... [141amd64-default-build-as-user-job-05] `-- Installing boost-libs-1.85.0... [141amd64-default-build-as-user-job-05] | `-- Installing icu-74.2_1,1... [141amd64-default-build-as-user-job-05] | `-- Extracting icu-74.2_1,1: .......... done [141amd64-default-build-as-user-job-05] `-- Extracting boost-libs-1.85.0: .......... done [141amd64-default-build-as-user-job-05] `-- Installing mpich-4.2.3... [141amd64-default-build-as-user-job-05] | `-- Installing json-c-0.18... [141amd64-default-build-as-user-job-05] | `-- Extracting json-c-0.18: .......... done [141amd64-default-build-as-user-job-05] | `-- Installing libepoll-shim-0.0.20240608... [141amd64-default-build-as-user-job-05] | `-- Extracting libepoll-shim-0.0.20240608: .......... done [141amd64-default-build-as-user-job-05] | `-- Installing libfabric-1.15.1_2... [141amd64-default-build-as-user-job-05] | `-- Extracting libfabric-1.15.1_2: .......... done [141amd64-default-build-as-user-job-05] | `-- Installing perl5-5.36.3_2... [141amd64-default-build-as-user-job-05] | `-- Extracting perl5-5.36.3_2: .......... done [141amd64-default-build-as-user-job-05] `-- Extracting mpich-4.2.3: .......... done [141amd64-default-build-as-user-job-05] Extracting precice-3.1.2: .......... done ===== Message from boost-libs-1.85.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> py311-pyprecice-2.5.0.4 depends on shared library: libprecice.so - found (/usr/local/lib/libprecice.so) ===> Returning to build of py311-pyprecice-2.5.0.4 =========================================================================== =======================<phase: configure >============================ ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py311-pyprecice-2.5.0.4 setup.py:11: UserWarning: It looks like you are not using pip for installation. Installing the package via 'pip3 install --user .' is recommended. You can still use 'python3 setup.py install --user', if you want and if the bindings work correctly, you do not have to worry. However, if you face problems during installation or running pyprecice, this means that you have to make sure that all dependencies are installed correctly and repeat the installation of pyprecice. Refer to pyproject.toml for a list of dependencies. warnings.warn( Failed to load config from /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/pyproject.toml: 'tool' Try to load it from setup.cfg running config =========================================================================== =======================<phase: build >============================ ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py311-pyprecice-2.5.0.4 setup.py:11: UserWarning: It looks like you are not using pip for installation. Installing the package via 'pip3 install --user .' is recommended. You can still use 'python3 setup.py install --user', if you want and if the bindings work correctly, you do not have to worry. However, if you face problems during installation or running pyprecice, this means that you have to make sure that all dependencies are installed correctly and repeat the installation of pyprecice. Refer to pyproject.toml for a list of dependencies. warnings.warn( Failed to load config from /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/pyproject.toml: 'tool' Try to load it from setup.cfg running build running build_py Failed to load config from /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/pyproject.toml: 'tool' Try to load it from setup.cfg Failed to load config from /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/pyproject.toml: 'tool' Try to load it from setup.cfg creating build creating build/lib creating build/lib/precice copying precice/__init__.py -> build/lib/precice copying precice/_version.py -> build/lib/precice UPDATING build/lib/precice/_version.py set build/lib/precice/_version.py to '2.5.0.4' =========================================================================== =======================<phase: run-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pyprecice-2.5.0.4 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> py311-pyprecice-2.5.0.4 depends on package: py311-mpi4py>0 - found ===> py311-pyprecice-2.5.0.4 depends on package: py311-setuptools>=63.1.0 - found ===> py311-pyprecice-2.5.0.4 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =======================<phase: stage >============================ ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py311-pyprecice-2.5.0.4 ===> Generating temporary packing list setup.py:11: UserWarning: It looks like you are not using pip for installation. Installing the package via 'pip3 install --user .' is recommended. You can still use 'python3 setup.py install --user', if you want and if the bindings work correctly, you do not have to worry. However, if you face problems during installation or running pyprecice, this means that you have to make sure that all dependencies are installed correctly and repeat the installation of pyprecice. Refer to pyproject.toml for a list of dependencies. warnings.warn( Failed to load config from /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/pyproject.toml: 'tool' Try to load it from setup.cfg running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( warning: cyprecice/cyprecice.pyx:1231:61: local variable '_value' referenced before assignment warning: cyprecice/cyprecice.pyx:1233:81: local variable '_value' referenced before assignment warning: cyprecice/cyprecice.pyx:1235:15: local variable '_value' referenced before assignment Compiling /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/cyprecice/cyprecice.pyx because it changed. [1/1] Cythonizing /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/cyprecice/cyprecice.pyx running build running build_py Failed to load config from /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/pyproject.toml: 'tool' Try to load it from setup.cfg Failed to load config from /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/pyproject.toml: 'tool' Try to load it from setup.cfg creating build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311 creating build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/precice copying precice/__init__.py -> build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/precice copying precice/_version.py -> build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/precice UPDATING build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/precice/_version.py set build/lib.freebsd-14.1-RELEASE-p6-amd64-cpython-311/precice/_version.py to '2.5.0.4' running build_ext Failed to load config from /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/pyproject.toml: 'tool' Try to load it from setup.cfg Failed to load config from /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/pyproject.toml: 'tool' Try to load it from setup.cfg building 'cyprecice' extension creating build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311 creating build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311/wrkdirs creating build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311/wrkdirs/usr creating build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311/wrkdirs/usr/ports creating build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311/wrkdirs/usr/ports/science creating build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311/wrkdirs/usr/ports/science/py-pyprecice creating build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311/wrkdirs/usr/ports/science/py-pyprecice/work-py311 creating build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311/wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4 creating build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311/wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/cyprecice cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include/python3.11 -c /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/cyprecice/cyprecice.cpp -o build/temp.freebsd-14.1-RELEASE-p6-amd64-cpython-311/wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/cyprecice/cyprecice.o -std=c++11 -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include In file included from /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/cyprecice/cyprecice.cpp:789: In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5: In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^ /wrkdirs/usr/ports/science/py-pyprecice/work-py311/python-bindings-2.5.0.4/cyprecice/cyprecice.cpp:816:10: fatal error: 'precice/SolverInterface.hpp' file not found 816 | #include "precice/SolverInterface.hpp" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning and 1 error generated. error: command '/usr/bin/cc' failed with exit code 1 *** Error code 1 Stop. make: stopped in /usr/ports/science/py-pyprecice
