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Maintainer: [email protected] Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/pe7b7ad617ba1_se2dd73cf45/logs/mdynamix-5.3.0.log Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=pe7b7ad617ba1_se2dd73cf45 Log: =>> Building science/mdynamix build started at Mon Mar 10 09:24:51 UTC 2025 port directory: /usr/ports/science/mdynamix package name: mdynamix-5.3.0 building for: FreeBSD main-armv7-default-job-06 15.0-CURRENT FreeBSD 15.0-CURRENT 1500033 arm maintained by: [email protected] Makefile datestamp: -rw-r--r-- 1 root wheel 991 Dec 21 2023 /usr/ports/science/mdynamix/Makefile Ports top last git commit: e7b7ad617ba Ports top unclean checkout: no Port dir last git commit: b4fb7dbd84e Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500028 Jail OSVERSION: 1500033 Job Id: 06 !!! Jail is newer than host. (Jail: 1500033, Host: 1500028) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500033 UNAME_v=FreeBSD 15.0-CURRENT 1500033 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-armv7-default/06/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" MAKE=/usr/local/bin/gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/mdynamix/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/mdynamix/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/mdynamix/work/.cache HOME=/wrkdirs/usr/ports/science/mdynamix/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/mdynamix/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/mdynamix/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/science/mdynamix/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/mdynamix/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/mdynamix/work/.cache HOME=/wrkdirs/usr/ports/science/mdynamix/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/mdynamix/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/mdynamix/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/loc al/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/mdynamix" EXAMPLESDIR="share/examples/mdynamix" DATADIR="share/mdynamix" WWWDIR="www/mdynamix" ETCDIR="etc/mdynamix" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mdynamix DOCSDIR=/usr/local/share/doc/mdynamix EXAMPLESDIR=/usr/local/share/examples/mdynamix WWWDIR=/usr/local/www/mdynamix ETCDIR=/usr/local/etc/mdynamix --End SUB_LIST-- ---Begin make.conf--- # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2+ accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> mdynamix-5.3.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.0.6.pkg [main-armv7-default-job-06] Installing pkg-2.0.6... [main-armv7-default-job-06] Extracting pkg-2.0.6: .......... done ===> mdynamix-5.3.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of mdynamix-5.3.0 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by mdynamix-5.3.0 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by mdynamix-5.3.0 for building => SHA256 Checksum OK for md530.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by mdynamix-5.3.0 for building ===> Extracting for mdynamix-5.3.0 => SHA256 Checksum OK for md530.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for mdynamix-5.3.0 =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> mdynamix-5.3.0 depends on executable: gfortran13 - not found ===> Installing existing package /packages/All/gcc13-13.3.0.pkg [main-armv7-default-job-06] Installing gcc13-13.3.0... [main-armv7-default-job-06] `-- Installing binutils-2.44,1... [main-armv7-default-job-06] | `-- Installing indexinfo-0.3.1_1... [main-armv7-default-job-06] | `-- Extracting indexinfo-0.3.1_1: .... done [main-armv7-default-job-06] | `-- Installing zstd-1.5.7... [main-armv7-default-job-06] | | `-- Installing liblz4-1.10.0,1... [main-armv7-default-job-06] | | `-- Extracting liblz4-1.10.0,1: .......... done <snip> 531 | call MPI_ALLREDUCE(BUFF,BUF2,IBUF,MPI_REAL, | 1 ...... 1117 | call MPI_ALLREDUCE(BUFF,BUF2,IBUF,MPI_DOUBLE_PRECISION, | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)). mpif77 -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o service.o service.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o service.o service.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o setup.o setup.f setup.f:978:72: 978 | DO 100 J = 1,NRY | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) setup.f:979:72: 979 | DO 100 K = 1,NRZ | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) mpif77 -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o setup.o setup.f setup.f:978:72: 978 | DO 100 J = 1,NRY | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) setup.f:979:72: 979 | DO 100 K = 1,NRZ | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) mpif77 -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o util.o util.f util.f:168:72: 168 | DO 20 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) util.f:169:72: 169 | 20 A(I,J)=A(I,J)/SCL | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) util.f:171:72: 171 | DO 30 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) util.f:177:72: 177 | DO 100 J=1,IU1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) util.f:178:72: 178 | 100 TES=TES+2.D0*A(I,J)*A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) util.f:185:72: 185 | DO 165 J=1,IUU1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 165 at (1) util.f:202:72: 202 | IF(K-I)140,135,135 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:207:72: 207 | 140 IF(K-J)145,150,150 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:223:72: 223 | IF(M-1)175,170,170 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:226:72: 226 | 175 IF(TES-RHO)180,180,105 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:228:72: 228 | DO 190 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 190 at (1) util.f:229:72: 229 | 190 A(I,J)=SCL*A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1) util.f:478:72: 478 | IF(NDIM-6)5,5,2 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:484:72: 484 | IF(I-NDIM)3,6,6 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) gfortran -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o util.o util.f util.f:168:72: 168 | DO 20 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) util.f:169:72: 169 | 20 A(I,J)=A(I,J)/SCL | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) util.f:171:72: 171 | DO 30 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) util.f:177:72: 177 | DO 100 J=1,IU1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) util.f:178:72: 178 | 100 TES=TES+2.D0*A(I,J)*A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) util.f:185:72: 185 | DO 165 J=1,IUU1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 165 at (1) util.f:202:72: 202 | IF(K-I)140,135,135 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:207:72: 207 | 140 IF(K-J)145,150,150 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:223:72: 223 | IF(M-1)175,170,170 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:226:72: 226 | 175 IF(TES-RHO)180,180,105 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:228:72: 228 | DO 190 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 190 at (1) util.f:229:72: 229 | 190 A(I,J)=SCL*A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1) util.f:478:72: 478 | IF(NDIM-6)5,5,2 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:484:72: 484 | IF(I-NDIM)3,6,6 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) gfortran -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -o md aver.o cpu_intel.o input.o forces.o main.o mdee.o mdstep.o restart.o scalar.o service.o setup.o util.o mpif77 -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -o mdp aver.o cpu_mpi.o input.o forces.o main.o mdee.o mdstep.o restart.o mpi.o pimd.o service.o setup.o util.o /usr/local/bin/ld: warning: _dvmd_lnx.o: missing .note.GNU-stack section implies executable stack /usr/local/bin/ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker /usr/local/bin/ld: main.o: in function `MAIN__': main.f:(.text+0x1734): undefined reference to `iunits_' /usr/local/bin/ld: main.f:(.text+0x28a8): undefined reference to `fcc_' /usr/local/bin/ld: main.f:(.text+0x293c): undefined reference to `dnasol_' /usr/local/bin/ld: main.f:(.text+0x29a4): undefined reference to `sphole_' /usr/local/bin/ld: main.f:(.text+0x29e8): undefined reference to `cubic_' /usr/local/bin/ld: main.f:(.text+0x3f1c): undefined reference to `bndlst_' /usr/local/bin/ld: main.f:(.text+0x4ea8): undefined reference to `pullini_' collect2: error: ld returned 1 exit status make[1]: *** [Makefile.gfortran:10: default] Error 1 make[1]: Leaving directory '/wrkdirs/usr/ports/science/mdynamix/work/mdynamix' gmake: *** [Makefile:2: default] Error 2 gmake: *** Waiting for unfinished jobs.... /usr/local/bin/ld: warning: _dvmd_lnx.o: missing .note.GNU-stack section implies executable stack /usr/local/bin/ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker make[1]: Leaving directory '/wrkdirs/usr/ports/science/mdynamix/work/mdynamix' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped making "build" in /usr/ports/science/mdynamix
