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Maintainer: jwba...@tds.net Last committer: w...@freebsd.org Ident: $FreeBSD: head/biology/plinkseq/Makefile 370680 2014-10-12 03:16:10Z wen $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p396164_s287479/logs/plinkseq-0.10.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p396164_s287479 Log: ====>> Building biology/plinkseq build started at Wed Sep 9 06:50:02 UTC 2015 port directory: /usr/ports/biology/plinkseq building for: FreeBSD head-armv6-default-job-14 11.0-CURRENT FreeBSD 11.0-CURRENT r287479 arm maintained by: jwba...@tds.net Makefile ident: $FreeBSD: head/biology/plinkseq/Makefile 370680 2014-10-12 03:16:10Z wen $ Poudriere version: 3.1.7 Host OSVERSION: 1100077 Jail OSVERSION: 1100079 !!! Jail is newer than host. (Jail: 1100079, Host: 1100077) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1100079 UNAME_v=FreeBSD 11.0-CURRENT r287479 UNAME_r=11.0-CURRENT LC_COLLATE=C BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM=screen MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=plinkseq-0.10 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.7 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/plinkseq" EXAMPLESDIR="share/examples/plinkseq" DATADIR="share/plinkseq" WWWDIR="www/plinkseq" ETCDIR="etc/plinkseq" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/plinkseq DOCSDIR=/usr/local/share/doc/plinkseq EXAMPLESDIR=/usr/local/share/examples/plinkseq WWWDIR=/usr/local/www/plinkseq ETCDIR=/usr/local/etc/plinkseq --End SUB_LIST-- ---Begin make.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex <snip> sizeof_uint64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ 2 warnings generated. libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_generator.lo -MD -MP -MF .deps/java_generator.Tpo -c google/protobuf/compiler/java/java_generator.cc -o java_generator.o >/dev/null 2>&1 mv -f .deps/java_generator.Tpo .deps/java_generator.Plo /bin/sh ../libtool --tag=CXX --mode=compile /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_helpers.lo -MD -MP -MF .deps/java_helpers.Tpo -c -o java_helpers.lo `test -f 'google/protobuf/compiler/java/java_helpers.cc' || echo './'`google/protobuf/compiler/java/java_helpers.cc libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_helpers.lo -MD -MP -MF .deps/java_helpers.Tpo -c google/protobuf/compiler/java/java_helpers.cc -fPIC -DPIC -o .libs/java_helpers.o In file included from google/protobuf/compiler/java/java_helpers.cc:40: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ In file included from google/protobuf/compiler/java/java_helpers.cc:40: ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ 2 warnings generated. libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_helpers.lo -MD -MP -MF .deps/java_helpers.Tpo -c google/protobuf/compiler/java/java_helpers.cc -o java_helpers.o >/dev/null 2>&1 mv -f .deps/java_helpers.Tpo .deps/java_helpers.Plo /bin/sh ../libtool --tag=CXX --mode=compile /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_message.lo -MD -MP -MF .deps/java_message.Tpo -c -o java_message.lo `test -f 'google/protobuf/compiler/java/java_message.cc' || echo './'`google/protobuf/compiler/java/java_message.cc libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_message.lo -MD -MP -MF .deps/java_message.Tpo -c google/protobuf/compiler/java/java_message.cc -fPIC -DPIC -o .libs/java_message.o In file included from google/protobuf/compiler/java/java_message.cc:50: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ In file included from google/protobuf/compiler/java/java_message.cc:50: ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ 2 warnings generated. libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_message.lo -MD -MP -MF .deps/java_message.Tpo -c google/protobuf/compiler/java/java_message.cc -o java_message.o >/dev/null 2>&1 mv -f .deps/java_message.Tpo .deps/java_message.Plo /bin/sh ../libtool --tag=CXX --mode=compile /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_message_field.lo -MD -MP -MF .deps/java_message_field.Tpo -c -o java_message_field.lo `test -f 'google/protobuf/compiler/java/java_message_field.cc' || echo './'`google/protobuf/compiler/java/java_message_field.cc libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_message_field.lo -MD -MP -MF .deps/java_message_field.Tpo -c google/protobuf/compiler/java/java_message_field.cc -fPIC -DPIC -o .libs/java_message_field.o In file included from google/protobuf/compiler/java/java_message_field.cc:43: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ In file included from google/protobuf/compiler/java/java_message_field.cc:43: ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ 2 warnings generated. libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_message_field.lo -MD -MP -MF .deps/java_message_field.Tpo -c google/protobuf/compiler/java/java_message_field.cc -o java_message_field.o >/dev/null 2>&1 mv -f .deps/java_message_field.Tpo .deps/java_message_field.Plo /bin/sh ../libtool --tag=CXX --mode=compile /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_primitive_field.lo -MD -MP -MF .deps/java_primitive_field.Tpo -c -o java_primitive_field.lo `test -f 'google/protobuf/compiler/java/java_primitive_field.cc' || echo './'`google/protobuf/compiler/java/java_primitive_field.cc libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_primitive_field.lo -MD -MP -MF .deps/java_primitive_field.Tpo -c google/protobuf/compiler/java/java_primitive_field.cc -fPIC -DPIC -o .libs/java_primitive_field.o In file included from google/protobuf/compiler/java/java_primitive_field.cc:44: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ In file included from google/protobuf/compiler/java/java_primitive_field.cc:44: ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ 2 warnings generated. libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_primitive_field.lo -MD -MP -MF .deps/java_primitive_field.Tpo -c google/protobuf/compiler/java/java_primitive_field.cc -o java_primitive_field.o >/dev/null 2>&1 mv -f .deps/java_primitive_field.Tpo .deps/java_primitive_field.Plo /bin/sh ../libtool --tag=CXX --mode=compile /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_service.lo -MD -MP -MF .deps/java_service.Tpo -c -o java_service.lo `test -f 'google/protobuf/compiler/java/java_service.cc' || echo './'`google/protobuf/compiler/java/java_service.cc libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_service.lo -MD -MP -MF .deps/java_service.Tpo -c google/protobuf/compiler/java/java_service.cc -fPIC -DPIC -o .libs/java_service.o In file included from google/protobuf/compiler/java/java_service.cc:40: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ In file included from google/protobuf/compiler/java/java_service.cc:40: ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ 2 warnings generated. libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_service.lo -MD -MP -MF .deps/java_service.Tpo -c google/protobuf/compiler/java/java_service.cc -o java_service.o >/dev/null 2>&1 mv -f .deps/java_service.Tpo .deps/java_service.Plo /bin/sh ../libtool --tag=CXX --mode=compile /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_string_field.lo -MD -MP -MF .deps/java_string_field.Tpo -c -o java_string_field.lo `test -f 'google/protobuf/compiler/java/java_string_field.cc' || echo './'`google/protobuf/compiler/java/java_string_field.cc libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_string_field.lo -MD -MP -MF .deps/java_string_field.Tpo -c google/protobuf/compiler/java/java_string_field.cc -fPIC -DPIC -o .libs/java_string_field.o In file included from google/protobuf/compiler/java/java_string_field.cc:45: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ In file included from google/protobuf/compiler/java/java_string_field.cc:45: ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ 2 warnings generated. libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_string_field.lo -MD -MP -MF .deps/java_string_field.Tpo -c google/protobuf/compiler/java/java_string_field.cc -o java_string_field.o >/dev/null 2>&1 mv -f .deps/java_string_field.Tpo .deps/java_string_field.Plo /bin/sh ../libtool --tag=CXX --mode=compile /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_doc_comment.lo -MD -MP -MF .deps/java_doc_comment.Tpo -c -o java_doc_comment.lo `test -f 'google/protobuf/compiler/java/java_doc_comment.cc' || echo './'`google/protobuf/compiler/java/java_doc_comment.cc libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_doc_comment.lo -MD -MP -MF .deps/java_doc_comment.Tpo -c google/protobuf/compiler/java/java_doc_comment.cc -fPIC -DPIC -o .libs/java_doc_comment.o In file included from google/protobuf/compiler/java/java_doc_comment.cc:40: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ In file included from google/protobuf/compiler/java/java_doc_comment.cc:40: ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ 2 warnings generated. libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT java_doc_comment.lo -MD -MP -MF .deps/java_doc_comment.Tpo -c google/protobuf/compiler/java/java_doc_comment.cc -o java_doc_comment.o >/dev/null 2>&1 mv -f .deps/java_doc_comment.Tpo .deps/java_doc_comment.Plo /bin/sh ../libtool --tag=CXX --mode=compile /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT python_generator.lo -MD -MP -MF .deps/python_generator.Tpo -c -o python_generator.lo `test -f 'google/protobuf/compiler/python/python_generator.cc' || echo './'`google/protobuf/compiler/python/python_generator.cc libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT python_generator.lo -MD -MP -MF .deps/python_generator.Tpo -c google/protobuf/compiler/python/python_generator.cc -fPIC -DPIC -o .libs/python_generator.o In file included from google/protobuf/compiler/python/python_generator.cc:59: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ In file included from google/protobuf/compiler/python/python_generator.cc:59: ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/common.h:382:11: note: expanded from macro 'GOOGLE_COMPILE_ASSERT' msg[bool(expr) ? 1 : -1] ^ 2 warnings generated. libtool: compile: /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -MT python_generator.lo -MD -MP -MF .deps/python_generator.Tpo -c google/protobuf/compiler/python/python_generator.cc -o python_generator.o >/dev/null 2>&1 mv -f .deps/python_generator.Tpo .deps/python_generator.Plo /bin/sh ../libtool --tag=CXX --mode=link /nxb-bin/usr/bin/c++ -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -version-info 8:0:0 -export-dynamic -no-undefined -o libprotoc.la -rpath /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib code_generator.lo command_line_interface.lo plugin.lo plugin.pb.lo subprocess.lo zip_writer.lo cpp_enum.lo cpp_enum_field.lo cpp_extension.lo cpp_field.lo cpp_file.lo cpp_generator.lo cpp_helpers.lo cpp_message.lo cpp_message_field.lo cpp_primitive_field.lo cpp_service.lo cpp_string_field.lo java_enum.lo java_enum_field.lo java_extension.lo java_field.lo java_file.lo java_generator.lo java_helpers.lo java_message.lo java_message_field.lo java_primitive_field.lo java_service.lo java_string_field.lo java_doc_comment.lo python_generator.lo -lpthread libprotobuf.la -lz libtool: link: /nxb-bin/usr/bin/c++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/crtbeginS.o .libs/code_generator.o .libs/command_line_interface.o .libs/plugin.o .libs/plugin.pb.o .libs/subprocess.o .libs/zip_writer.o .libs/cpp_enum.o .libs/cpp_enum_field.o .libs/cpp_extension.o .libs/cpp_field.o .libs/cpp_file.o .libs/cpp_generator.o .libs/cpp_helpers.o .libs/cpp_message.o .libs/cpp_message_field.o .libs/cpp_primitive_field.o .libs/cpp_service.o .libs/cpp_string_field.o .libs/java_enum.o .libs/java_enum_field.o .libs/java_extension.o .libs/java_field.o .libs/java_file.o .libs/java_generator.o .libs/java_helpers.o .libs/java_message.o .libs/java_message_field.o .libs/java_primitive_field.o .libs/java_service.o .libs/java_string_field.o .libs/java_doc_comment.o .libs/python_generator.o -Wl,-rpath -Wl,/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/src/.libs -Wl,-rpath -Wl,/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/proto buf/../build/lib -lpthread ./.libs/libprotobuf.so -lz -L/usr/lib -lc++ -lm -lc -lgcc -lgcc_s /usr/lib/crtendS.o /usr/lib/crtn.o -pthread -O2 -mfloat-abi=softfp -pthread -Wl,-soname -Wl,libprotoc.so.8 -o .libs/libprotoc.so.8.0.0 c++: warning: argument unused during compilation: '-pthread' c++: warning: argument unused during compilation: '-pthread' libtool: link: (cd ".libs" && rm -f "libprotoc.so.8" && ln -s "libprotoc.so.8.0.0" "libprotoc.so.8") libtool: link: (cd ".libs" && rm -f "libprotoc.so" && ln -s "libprotoc.so.8.0.0" "libprotoc.so") libtool: link: ar cru .libs/libprotoc.a code_generator.o command_line_interface.o plugin.o plugin.pb.o subprocess.o zip_writer.o cpp_enum.o cpp_enum_field.o cpp_extension.o cpp_field.o cpp_file.o cpp_generator.o cpp_helpers.o cpp_message.o cpp_message_field.o cpp_primitive_field.o cpp_service.o cpp_string_field.o java_enum.o java_enum_field.o java_extension.o java_field.o java_file.o java_generator.o java_helpers.o java_message.o java_message_field.o java_primitive_field.o java_service.o java_string_field.o java_doc_comment.o python_generator.o libtool: link: ranlib .libs/libprotoc.a libtool: link: ( cd ".libs" && rm -f "libprotoc.la" && ln -s "../libprotoc.la" "libprotoc.la" ) /bin/sh ../libtool --tag=CXX --mode=link /nxb-bin/usr/bin/c++ -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -D_THREAD_SAFE -pthread -o protoc main.o -lpthread libprotobuf.la libprotoc.la -lz libtool: link: /nxb-bin/usr/bin/c++ -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing -D_THREAD_SAFE -pthread -o .libs/protoc main.o -lpthread ./.libs/libprotobuf.so ./.libs/libprotoc.so -lz -pthread -Wl,-rpath -Wl,/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib oldpwd=`pwd` && ( cd . && $oldpwd/protoc -I. --cpp_out=$oldpwd google/protobuf/unittest.proto google/protobuf/unittest_empty.proto google/protobuf/unittest_import.proto google/protobuf/unittest_import_public.proto google/protobuf/unittest_mset.proto google/protobuf/unittest_optimize_for.proto google/protobuf/unittest_embed_optimize_for.proto google/protobuf/unittest_custom_options.proto google/protobuf/unittest_lite.proto google/protobuf/unittest_import_lite.proto google/protobuf/unittest_import_public_lite.proto google/protobuf/unittest_lite_imports_nonlite.proto google/protobuf/unittest_no_generic_services.proto google/protobuf/compiler/cpp/cpp_test_bad_identifiers.proto ) qemu: unhandled CPU exception 0x9 - aborting R00=ffff0fa0 R01=4213da44 R02=42111661 R03=fffd4d89 R04=00001027 R05=421118c4 R06=00001218 R07=00000000 R08=40025c98 R09=00000003 R10=420043b0 R11=9fffd7d0 R12=4209c290 R13=9fffd798 R14=4209c2c8 R15=ffff0fa0 PSR=60000010 -ZC- A usr32 Makefile:3114: recipe for target 'unittest_proto_middleman' failed gmake[6]: *** [unittest_proto_middleman] Segmentation fault (core dumped) gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0/src' Makefile:568: recipe for target 'all-recursive' failed gmake[5]: *** [all-recursive] Error 1 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0' Makefile:477: recipe for target 'all' failed gmake[4]: *** [all] Error 2 gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0' Makefile:5: recipe for target 'build/lib/libprotobuf.a' failed gmake[3]: *** [build/lib/libprotobuf.a] Error 2 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext' Makefile:170: recipe for target 'sources/ext' failed gmake[2]: *** [sources/ext] Error 2 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10' Makefile:165: recipe for target 'all' failed gmake[1]: *** [all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10' *** Error code 1 Stop. make: stopped in /usr/ports/biology/plinkseq _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list 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