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Maintainer: [email protected] Log URL: https://pkg-status.freebsd.org/package19/data/142amd64-default-build-as-user/0028b32312ae/logs/votca-2025_3.log Build URL: https://pkg-status.freebsd.org/package19/build.html?mastername=142amd64-default-build-as-user&build=0028b32312ae Log: =>> Building science/votca build started at Thu Sep 18 06:51:59 -00 2025 port directory: /usr/ports/science/votca package name: votca-2025_3 building for: FreeBSD 142amd64-default-build-as-user-job-11 14.2-RELEASE-p5 FreeBSD 14.2-RELEASE-p5 amd64 maintained by: [email protected] Makefile datestamp: -rw-r--r-- 1 root wheel 2501 Sep 7 00:02 /usr/ports/science/votca/Makefile Ports top last git commit: 0028b32312 Ports top unclean checkout: no Port dir last git commit: b304d8ab18 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.3 Host OSVERSION: 1600000 Jail OSVERSION: 1402000 Job Id: 11 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE-p5 UNAME_r=14.2-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.3 MASTERMNT=/poudriere/data/.m/142amd64-default-build-as-user/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/poudriere/data/.m/142amd64-default-build-as-user/11/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=142amd64-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/poudriere/data/.m/142amd64-default-build-as-user/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.3 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for votca-2025_3: APPS=on: Build applications ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/votca/work/.cache HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/votca/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/votca/work/.cache HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/votca/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/votca/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="i nstall -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- APPS="" NO_APPS="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.42.0 PERL_VER=5.42 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.42 DOCSDIR="share/doc/votca" EXAMPLESDIR="share/examples/votca" DATADIR="share/votca" WWWDIR="www/votca" ETCDIR="etc/votca" --End PLIST_SUB-- --SUB_LIST-- APPS="" NO_APPS="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/votca DOCSDIR=/usr/local/share/doc/votca EXAMPLESDIR=/usr/local/share/examples/votca WWWDIR=/usr/local/www/votca ETCDIR=/usr/local/etc/votca --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License APACHE20 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> votca-2025_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.3.1.pkg [142amd64-default-build-as-user-job-11] Installing pkg-2.3.1... [142amd64-default-build-as-user-job-11] Extracting pkg-2.3.1: .......... done ===> votca-2025_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of votca-2025_3 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-2025_3 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-2025_3 for building => SHA256 Checksum OK for votca-votca-v2025_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-2025_3 for building ===> Extracting for votca-2025_3 => SHA256 Checksum OK for votca-votca-v2025_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for votca-2025_3 =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> votca-2025_3 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.3.3_1.pkg [142amd64-default-build-as-user-job-11] Installing bash-5.3.3_1... [142amd64-default-build-as-user-job-11] `-- Installing gettext-runtime-0.23.1... [142amd64-default-build-as-user-job-11] | `-- Installing indexinfo-0.3.1_1... [142amd64-default-build-as-user-job-11] | `-- Extracting indexinfo-0.3.1_1: .... done [142amd64-default-build-as-user-job-11] `-- Extracting gettext-runtime-0.23.1: .......... done [142amd64-default-build-as-user-job-11] Extracting bash-5.3.3_1: .......... done ===> votca-2025_3 depends on executable: bash - found ===> Returning to build of votca-2025_3 ===> votca-2025_3 depends on executable: lmp - not found ===> Installing existing package /packages/All/lammps-20241119_2.pkg [142amd64-default-build-as-user-job-11] Installing lammps-20241119_2... [142amd64-default-build-as-user-job-11] `-- Installing curl-8.15.0... [142amd64-default-build-as-user-job-11] | `-- Installing brotli-1.1.0,1... [142amd64-default-build-as-user-job-11] | `-- Extracting brotli-1.1.0,1: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing libidn2-2.3.8... [142amd64-default-build-as-user-job-11] | | `-- Installing libunistring-1.3... [142amd64-default-build-as-user-job-11] | | `-- Extracting libunistring-1.3: .......... done [142amd64-default-build-as-user-job-11] | `-- Extracting libidn2-2.3.8: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing libnghttp2-1.67.0... [142amd64-default-build-as-user-job-11] | `-- Extracting libnghttp2-1.67.0: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing libpsl-0.21.5_2... [142amd64-default-build-as-user-job-11] | `-- Extracting libpsl-0.21.5_2: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing libssh2-1.11.1,3... [142amd64-default-build-as-user-job-11] | `-- Extracting libssh2-1.11.1,3: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing zstd-1.5.7... <snip> set sasl_pwcheck_method to saslauthd after installing the Cyrus-IMAPd 2.X port. You should also check the /usr/local/lib/sasl2/*.conf files for the correct pwcheck_method. If you want to use GSSAPI mechanism, install ports/security/cyrus-sasl2-gssapi. If you want to use SRP mechanism, install ports/security/cyrus-sasl2-srp. If you want to use LDAP auxprop plugin, install ports/security/cyrus-sasl2-ldapdb. ===== Message from groff-1.23.0_5: -- In order to be able to use the html driver, you need to install the following packages: - ghostscript - netpbm -- ===> NOTICE: The groff port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from openldap26-client-2.6.10: -- The OpenLDAP client package has been successfully installed. Edit /usr/local/etc/openldap/ldap.conf to change the system-wide client defaults. Try `man ldap.conf' and visit the OpenLDAP FAQ-O-Matic at http://www.OpenLDAP.org/faq/index.cgi?file=3 for more information. ===== Message from mysql80-client-8.0.43: -- This is the mysql CLIENT without the server. for complete server and client, please install databases/mysql80-server ===== Message from openmpi4-4.1.8: -- ===> NOTICE: The openmpi4 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> votca-2025_3 depends on executable: lmp - found ===> Returning to build of votca-2025_3 ===> votca-2025_3 depends on package: py311-ase>0 - not found ===> Installing existing package /packages/All/py311-ase-3.26.0.pkg [142amd64-default-build-as-user-job-11] Installing py311-ase-3.26.0... [142amd64-default-build-as-user-job-11] `-- Installing py311-matplotlib-3.8.0_2... [142amd64-default-build-as-user-job-11] | `-- Installing py311-certifi-2025.8.3... [142amd64-default-build-as-user-job-11] | `-- Extracting py311-certifi-2025.8.3: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing py311-contourpy-1.3.2... [142amd64-default-build-as-user-job-11] | | `-- Installing py311-numpy-1.26.4_7,1... [142amd64-default-build-as-user-job-11] | | `-- Installing suitesparse-umfpack-6.3.6... [142amd64-default-build-as-user-job-11] | | | `-- Installing suitesparse-amd-3.3.4... [142amd64-default-build-as-user-job-11] | | | `-- Installing suitesparse-config-7.11.0... [142amd64-default-build-as-user-job-11] | | | `-- Extracting suitesparse-config-7.11.0: .......... done [142amd64-default-build-as-user-job-11] | | | `-- Extracting suitesparse-amd-3.3.4: .......... done [142amd64-default-build-as-user-job-11] | | | `-- Installing suitesparse-camd-3.3.5... [142amd64-default-build-as-user-job-11] | | | `-- Extracting suitesparse-camd-3.3.5: .......... done [142amd64-default-build-as-user-job-11] | | | `-- Installing suitesparse-ccolamd-3.3.5... [142amd64-default-build-as-user-job-11] | | | `-- Extracting suitesparse-ccolamd-3.3.5: .......... done [142amd64-default-build-as-user-job-11] | | | `-- Installing suitesparse-cholmod-5.3.4... [142amd64-default-build-as-user-job-11] | | | `-- Installing suitesparse-colamd-3.3.5... [142amd64-default-build-as-user-job-11] | | | `-- Extracting suitesparse-colamd-3.3.5: .......... done [142amd64-default-build-as-user-job-11] | | | `-- Extracting suitesparse-cholmod-5.3.4: .......... done [142amd64-default-build-as-user-job-11] | | `-- Extracting suitesparse-umfpack-6.3.6: .......... done [142amd64-default-build-as-user-job-11] | | `-- Extracting py311-numpy-1.26.4_7,1: .......... done [142amd64-default-build-as-user-job-11] | `-- Extracting py311-contourpy-1.3.2: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing py311-cycler-0.12.1... [142amd64-default-build-as-user-job-11] | `-- Extracting py311-cycler-0.12.1: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing py311-fonttools-4.59.2_1... [142amd64-default-build-as-user-job-11] | | `-- Installing py311-brotli-1.1.0... [142amd64-default-build-as-user-job-11] | | `-- Extracting py311-brotli-1.1.0: .......... done [142amd64-default-build-as-user-job-11] | | `-- Installing py311-lxml-6.0.1... [142amd64-default-build-as-user-job-11] | | `-- Installing libxslt-1.1.43_1... [142amd64-default-build-as-user-job-11] | | `-- Extracting libxslt-1.1.43_1: .......... done [142amd64-default-build-as-user-job-11] | | `-- Extracting py311-lxml-6.0.1: .......... done [142amd64-default-build-as-user-job-11] | | `-- Installing py311-unicodedata2-16.0.0... [142amd64-default-build-as-user-job-11] | | `-- Extracting py311-unicodedata2-16.0.0: ......... done [142amd64-default-build-as-user-job-11] | | `-- Installing py311-zopfli-0.2.3... [142amd64-default-build-as-user-job-11] | | `-- Extracting py311-zopfli-0.2.3: .......... done [142amd64-default-build-as-user-job-11] | `-- Extracting py311-fonttools-4.59.2_1: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing py311-importlib-resources-6.5.2... [142amd64-default-build-as-user-job-11] | `-- Extracting py311-importlib-resources-6.5.2: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing py311-kiwisolver-1.4.8,1... [142amd64-default-build-as-user-job-11] | `-- Extracting py311-kiwisolver-1.4.8,1: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing py311-pillow-11.3.0_1... [142amd64-default-build-as-user-job-11] | | `-- Installing libavif-1.3.0_2... [142amd64-default-build-as-user-job-11] | | `-- Installing libyuv-0.0.1903... [142amd64-default-build-as-user-job-11] | | `-- Extracting libyuv-0.0.1903: .......... done [142amd64-default-build-as-user-job-11] | | `-- Extracting libavif-1.3.0_2: .......... done [142amd64-default-build-as-user-job-11] | | `-- Installing libimagequant-4.3.4_5... [142amd64-default-build-as-user-job-11] | | `-- Extracting libimagequant-4.3.4_5: ......... done [142amd64-default-build-as-user-job-11] | | `-- Installing libraqm-0.10.2... 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[142amd64-default-build-as-user-job-11] | | `-- Installing py311-six-1.17.0... [142amd64-default-build-as-user-job-11] | | `-- Extracting py311-six-1.17.0: .......... done [142amd64-default-build-as-user-job-11] | `-- Extracting py311-python-dateutil-2.9.0: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing py311-pytz-2025.2_1,1... [142amd64-default-build-as-user-job-11] | `-- Extracting py311-pytz-2025.2_1,1: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing py311-tornado-6.5... [142amd64-default-build-as-user-job-11] | `-- Extracting py311-tornado-6.5: .......... done [142amd64-default-build-as-user-job-11] | `-- Installing qhull-8.0.2_3,1... [142amd64-default-build-as-user-job-11] | `-- Extracting qhull-8.0.2_3,1: .......... done [142amd64-default-build-as-user-job-11] `-- Extracting py311-matplotlib-3.8.0_2: .......... done [142amd64-default-build-as-user-job-11] `-- Installing py311-scipy-1.11.1_4,1... [142amd64-default-build-as-user-job-11] `-- Extracting py311-scipy-1.11.1_4,1: .......... done [142amd64-default-build-as-user-job-11] Extracting py311-ase-3.26.0: .......... done ==> Running trigger: gdk-pixbuf-query-loaders.ucl Generating gdk-pixbuf modules cache ===== Message from libimagequant-4.3.4_5: -- ===> NOTICE: The libimagequant port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from libraqm-0.10.2: -- ===> NOTICE: The libraqm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> votca-2025_3 depends on package: py311-ase>0 - found ===> Returning to build of votca-2025_3 ===> votca-2025_3 depends on package: py311-h5py>0 - not found ===> Installing existing package /packages/All/py311-h5py-3.13.0.pkg [142amd64-default-build-as-user-job-11] Installing py311-h5py-3.13.0... [142amd64-default-build-as-user-job-11] Extracting py311-h5py-3.13.0: .......... done ===> votca-2025_3 depends on package: py311-h5py>0 - found ===> Returning to build of votca-2025_3 ===> votca-2025_3 depends on package: py311-lxml5>0 - not found ===> Installing existing package /packages/All/py311-lxml5-5.4.0_2.pkg [142amd64-default-build-as-user-job-11] Installing py311-lxml5-5.4.0_2... pkg-static: py311-lxml5-5.4.0_2 conflicts with py311-lxml-6.0.1 (installs files into the same place). Problematic file: /usr/local/lib/python3.11/site-packages/lxml/ElementInclude.py Failed to install the following 1 package(s): /packages/All/py311-lxml5-5.4.0_2.pkg *** Error code 1 Stop. make: stopped in /usr/ports/science/votca
