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Maintainer: [email protected] Log URL: https://pkg-status.freebsd.org/beefy22/data/143amd64-default/f0beb1ebfa25/logs/py311-pyked-0.4.1.16_3.log Build URL: https://pkg-status.freebsd.org/beefy22/build.html?mastername=143amd64-default&build=f0beb1ebfa25 Log: =>> Building science/py-pyked build started at Sat Dec 13 20:06:59 -00 2025 port directory: /usr/ports/science/py-pyked package name: py311-pyked-0.4.1.16_3 building for: FreeBSD 143amd64-default-job-23 14.3-RELEASE-p6 FreeBSD 14.3-RELEASE-p6 amd64 maintained by: [email protected] Makefile datestamp: -rw-r--r-- 1 root wheel 962 Mar 11 2025 /usr/ports/science/py-pyked/Makefile Ports top last git commit: f0beb1ebfa25330ccd8c6c53bea3e06a7e3cdc6e Ports top unclean checkout: no Port dir last git commit: 06a08e69f3acb846ad8252945f53c3a2d211e303 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.4-8-ge4f2486b Host OSVERSION: 1600000 Jail OSVERSION: 1403000 Job Id: 23 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1403000 UNAME_v=FreeBSD 14.3-RELEASE-p6 UNAME_r=14.3-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.4-8-ge4f2486b MASTERMNT=/usr/local/poudriere/data/.m/143amd64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/143amd64-default/23/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=143amd64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/143amd64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.4-8-ge4f2486b SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-pyked/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-pyked/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-pyked/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-pyked/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-pyked/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-pyked/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-pyked/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-pyked/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-pyked/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-pyked/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-pyked/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-pyked/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 06 44" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py311-pyked" EXAMPLESDIR="share/examples/py311-pyked" DATADIR="share/py311-pyked" WWWDIR="www/py311-pyked" ETCDIR="etc/py311-pyked" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py311-pyked DOCSDIR=/usr/local/share/doc/py311-pyked EXAMPLESDIR=/usr/local/share/examples/py311-pyked WWWDIR=/usr/local/www/py311-pyked ETCDIR=/usr/local/etc/py311-pyked --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pyked-0.4.1.16_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.4.2_1.pkg [143amd64-default-job-23] Installing pkg-2.4.2_1... [143amd64-default-job-23] Extracting pkg-2.4.2_1: .......... done ===> py311-pyked-0.4.1.16_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-pyked-0.4.1.16_3 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py311-pyked-0.4.1.16_3 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py311-pyked-0.4.1.16_3 for building => SHA256 Checksum OK for pr-omethe-us-PyKED-v0.4.1-16-gfcccaf8_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py311-pyked-0.4.1.16_3 for building ===> Extracting for py311-pyked-0.4.1.16_3 => SHA256 Checksum OK for pr-omethe-us-PyKED-v0.4.1-16-gfcccaf8_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-pyked-0.4.1.16_3 =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pyked-0.4.1.16_3 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [143amd64-default-job-23] Installing py311-setuptools-63.1.0_3... [143amd64-default-job-23] `-- Installing python311-3.11.14... [143amd64-default-job-23] | `-- Installing gettext-runtime-0.23.1... [143amd64-default-job-23] | | `-- Installing indexinfo-0.3.1_1... [143amd64-default-job-23] | | `-- Extracting indexinfo-0.3.1_1: .... done [143amd64-default-job-23] | `-- Extracting gettext-runtime-0.23.1: .......... done [143amd64-default-job-23] | `-- Installing libffi-3.5.1... [143amd64-default-job-23] | `-- Extracting libffi-3.5.1: .......... done [143amd64-default-job-23] | `-- Installing mpdecimal-4.0.1... [143amd64-default-job-23] | `-- Extracting mpdecimal-4.0.1: .......... done [143amd64-default-job-23] | `-- Installing readline-8.3.1... [143amd64-default-job-23] | `-- Extracting readline-8.3.1: .......... done [143amd64-default-job-23] `-- Extracting python311-3.11.14: .......... done [143amd64-default-job-23] Extracting py311-setuptools-63.1.0_3: .......... done ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-pyked-0.4.1.16_3 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-pyked-0.4.1.16_3 ===> py311-pyked-0.4.1.16_3 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =======================<phase: lib-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: configure >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-pyked-0.4.1.16_3 /usr/local/lib/python3.11/site-packages/setuptools/config/setupcfg.py:463: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. warnings.warn(msg, warning_class) running config =========================================================================== =======================<phase: build >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-pyked-0.4.1.16_3 /usr/local/lib/python3.11/site-packages/setuptools/config/setupcfg.py:463: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. warnings.warn(msg, warning_class) running build running build_py creating build creating build/lib creating build/lib/pyked copying pyked/orcid.py -> build/lib/pyked copying pyked/chemked.py -> build/lib/pyked copying pyked/__init__.py -> build/lib/pyked copying pyked/validation.py -> build/lib/pyked copying pyked/converters.py -> build/lib/pyked copying pyked/_version.py -> build/lib/pyked creating build/lib/pyked/tests copying pyked/tests/__init__.py -> build/lib/pyked/tests copying pyked/tests/test_validation.py -> build/lib/pyked/tests copying pyked/tests/test_converters.py -> build/lib/pyked/tests copying pyked/tests/test_chemked.py -> build/lib/pyked/tests copying pyked/tests/test_version.py -> build/lib/pyked/tests running egg_info creating pyked.egg-info writing pyked.egg-info/PKG-INFO writing dependency_links to pyked.egg-info/dependency_links.txt writing entry points to pyked.egg-info/entry_points.txt writing requirements to pyked.egg-info/requires.txt writing top-level names to pyked.egg-info/top_level.txt writing manifest file 'pyked.egg-info/SOURCES.txt' reading manifest file 'pyked.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyked.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'pyked.schemas' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pyked.schemas' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pyked.schemas' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pyked.schemas' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating build/lib/pyked/schemas copying pyked/schemas/chemked_schema.yaml -> build/lib/pyked/schemas copying pyked/schemas/composition_schema.yaml -> build/lib/pyked/schemas copying pyked/schemas/ignition_delay_schema.yaml -> build/lib/pyked/schemas copying pyked/schemas/value_unit_schema.yaml -> build/lib/pyked/schemas copying pyked/tests/dataframe_st.csv -> build/lib/pyked/tests copying pyked/tests/rcm_history.csv -> build/lib/pyked/tests copying pyked/tests/testfile_bad.yaml -> build/lib/pyked/tests copying pyked/tests/testfile_many_species.yaml -> build/lib/pyked/tests copying pyked/tests/testfile_rcm.xml -> build/lib/pyked/tests copying pyked/tests/testfile_rcm.yaml -> build/lib/pyked/tests copying pyked/tests/testfile_rcm2.yaml -> build/lib/pyked/tests copying pyked/tests/testfile_rcm_old.yaml -> build/lib/pyked/tests copying pyked/tests/testfile_required.yaml -> build/lib/pyked/tests copying pyked/tests/testfile_st.xml -> build/lib/pyked/tests copying pyked/tests/testfile_st.yaml -> build/lib/pyked/tests copying pyked/tests/testfile_st2.yaml -> build/lib/pyked/tests copying pyked/tests/testfile_st_p5.yaml -> build/lib/pyked/tests copying pyked/tests/testfile_st_thermo.yaml -> build/lib/pyked/tests copying pyked/tests/testfile_uncertainty.yaml -> build/lib/pyked/tests =========================================================================== =======================<phase: run-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pyked-0.4.1.16_3 depends on package: py311-numpy>=1.16,1<1.27,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_11,1.pkg [143amd64-default-job-23] Installing py311-numpy-1.26.4_11,1... [143amd64-default-job-23] `-- Installing gcc13-13.3.0_3... [143amd64-default-job-23] | `-- Installing binutils-2.44,1... [143amd64-default-job-23] | | `-- Installing zstd-1.5.7_1... [143amd64-default-job-23] | | `-- Extracting zstd-1.5.7_1: .......... done [143amd64-default-job-23] | `-- Extracting binutils-2.44,1: .......... done [143amd64-default-job-23] | `-- Installing gmp-6.3.0... [143amd64-default-job-23] | `-- Extracting gmp-6.3.0: .......... done [143amd64-default-job-23] | `-- Installing mpc-1.3.1_1... [143amd64-default-job-23] | | `-- Installing mpfr-4.2.2,1... [143amd64-default-job-23] | | `-- Extracting mpfr-4.2.2,1: .......... done [143amd64-default-job-23] | `-- Extracting mpc-1.3.1_1: ......... done [143amd64-default-job-23] `-- Extracting gcc13-13.3.0_3: .......... done [143amd64-default-job-23] `-- Installing openblas-0.3.30,2... [143amd64-default-job-23] `-- Extracting openblas-0.3.30,2: .......... done [143amd64-default-job-23] `-- Installing suitesparse-umfpack-6.3.7... [143amd64-default-job-23] | `-- Installing suitesparse-amd-3.3.4... [143amd64-default-job-23] | | `-- Installing suitesparse-config-7.12.1... [143amd64-default-job-23] | | `-- Extracting suitesparse-config-7.12.1: .......... done [143amd64-default-job-23] | `-- Extracting suitesparse-amd-3.3.4: .......... done [143amd64-default-job-23] | `-- Installing suitesparse-camd-3.3.5... [143amd64-default-job-23] | `-- Extracting suitesparse-camd-3.3.5: .......... done [143amd64-default-job-23] | `-- Installing suitesparse-ccolamd-3.3.5... [143amd64-default-job-23] | `-- Extracting suitesparse-ccolamd-3.3.5: .......... done [143amd64-default-job-23] | `-- Installing suitesparse-cholmod-5.3.4... [143amd64-default-job-23] | | `-- Installing suitesparse-colamd-3.3.5... [143amd64-default-job-23] | | `-- Extracting suitesparse-colamd-3.3.5: .......... done [143amd64-default-job-23] | `-- Extracting suitesparse-cholmod-5.3.4: .......... done [143amd64-default-job-23] `-- Extracting suitesparse-umfpack-6.3.7: .......... done [143amd64-default-job-23] Extracting py311-numpy-1.26.4_11,1: .......... done ===== Message from gcc13-13.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py311-pyked-0.4.1.16_3 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> Returning to build of py311-pyked-0.4.1.16_3 ===> py311-pyked-0.4.1.16_3 depends on package: py311-Cerberus>=1.0.0 - not found ===> Installing existing package /packages/All/py311-cerberus-1.3.8_1.pkg [143amd64-default-job-23] Installing py311-cerberus-1.3.8_1... [143amd64-default-job-23] Extracting py311-cerberus-1.3.8_1: .......... done ===> py311-pyked-0.4.1.16_3 depends on package: py311-Cerberus>=1.0.0 - not found *** Error code 1 Stop. make: stopped in /usr/ports/science/py-pyked
